RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 GABPB1Q06547 395 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-219ENST00000555563 CEACAM21Q3KPI0 293 aa11.43□□□□□ -0.58
SHMT2-219ENST00000555563 CDONQ4KMG0 1287 aa11.43□□□□□ -0.58
SHMT2-219ENST00000555563 FAM76BQ5HYJ3 339 aa11.43□□□□□ -0.58
SHMT2-219ENST00000555563 WDR25Q64LD2 544 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-219ENST00000555563 ZNF841Q6ZN19 808 aa11.43□□□□□ -0.58
SHMT2-219ENST00000555563 Q6ZSR3 168 aa11.43□□□□□ -0.58
SHMT2-219ENST00000555563 MOB3CQ70IA8 216 aa11.43□□□□□ -0.58
SHMT2-219ENST00000555563 DOK3Q7L591 496 aa11.43□□□□□ -0.58
SHMT2-219ENST00000555563 PRSS35Q8N3Z0 413 aa11.43□□□□□ -0.58
SHMT2-219ENST00000555563 TEX29Q8N6K0 151 aa11.43□□□□□ -0.58
SHMT2-219ENST00000555563 ACBD7Q8N6N7 88 aa11.43□□□□□ -0.58
SHMT2-219ENST00000555563 SCCPDHQ8NBX0 429 aa11.43□□□□□ -0.58
SHMT2-219ENST00000555563 OR14K1Q8NGZ2 314 aa11.43□□□□□ -0.58
SHMT2-219ENST00000555563 RNF166Q96A37 237 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-219ENST00000555563 DACT3Q96B18 629 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-219ENST00000555563 SEH1LQ96EE3 360 aa11.43□□□□□ -0.58
SHMT2-219ENST00000555563 HIST1H2AAQ96QV6 131 aa11.43□□□□□ -0.58
SHMT2-219ENST00000555563 SMURF1Q9HCE7 757 aa11.43□□□□□ -0.58
SHMT2-219ENST00000555563 AMBNQ9NP70 447 aa11.43□□□□□ -0.58
SHMT2-219ENST00000555563 C8orf4Q9NR00 106 aa11.43□□□□□ -0.58
SHMT2-219ENST00000555563 METRNQ9UJH8 293 aa11.43□□□□□ -0.58
SHMT2-219ENST00000555563 EXOGQ9Y2C4 368 aaKnown RBP11.43□□□□□ -0.58
SHMT2-219ENST00000555563 CUBNO60494 3623 aa11.42□□□□□ -0.58
SHMT2-219ENST00000555563 IGHV2-70DA0A0C4DH43 119 aa11.42□□□□□ -0.58
SHMT2-219ENST00000555563 LOC107986453A0A1B0GWG9 222 aa11.42□□□□□ -0.58
SHMT2-219ENST00000555563 A6NIN4 97 aa11.42□□□□□ -0.58
SHMT2-219ENST00000555563 DHRS7CA6NNS2 312 aa11.42□□□□□ -0.58
SHMT2-219ENST00000555563 ZNF732B4DXR9 585 aa11.42□□□□□ -0.58
SHMT2-219ENST00000555563 TNFRSF13BO14836 293 aaPredicted RBP11.42□□□□□ -0.58
SHMT2-219ENST00000555563 CLIC3O95833 236 aa11.42□□□□□ -0.58
SHMT2-219ENST00000555563 NRASP01111 189 aa11.42□□□□□ -0.58
SHMT2-219ENST00000555563 FSHBP01225 129 aa11.42□□□□□ -0.58
SHMT2-219ENST00000555563 EPHA1P21709 976 aa11.42□□□□□ -0.58
SHMT2-219ENST00000555563 OR12D2P58182 307 aa11.42□□□□□ -0.58
SHMT2-219ENST00000555563 GMFBP60983 142 aa11.42□□□□□ -0.58
SHMT2-219ENST00000555563 ELF3P78545 371 aaPredicted RBP11.42□□□□□ -0.58
SHMT2-219ENST00000555563 SRSF2Q01130 221 aaKnown RBP11.42□□□□□ -0.58
SHMT2-219ENST00000555563 MICBQ29980 383 aa11.42□□□□□ -0.58
SHMT2-219ENST00000555563 TMEM42Q69YG0 159 aa11.42□□□□□ -0.58
SHMT2-219ENST00000555563 PACRGLQ8N7B6 248 aa11.42□□□□□ -0.58
SHMT2-219ENST00000555563 C4orf36Q96KX1 117 aa11.42□□□□□ -0.58
SHMT2-219ENST00000555563 Q96MT0 163 aa11.42□□□□□ -0.58
SHMT2-219ENST00000555563 TECTBQ96PL2 329 aa11.42□□□□□ -0.58
SHMT2-219ENST00000555563 WDR13Q9H1Z4 485 aa11.42□□□□□ -0.58
SHMT2-219ENST00000555563 OR51I2Q9H344 312 aa11.42□□□□□ -0.58
SHMT2-219ENST00000555563 PLEKHA1Q9HB21 404 aa11.42□□□□□ -0.58
SHMT2-219ENST00000555563 GPR173Q9NS66 373 aa11.42□□□□□ -0.58
SHMT2-219ENST00000555563 MYRFQ9Y2G1 1151 aa11.42□□□□□ -0.58
SHMT2-219ENST00000555563 PCDHGB1Q9Y5G3 927 aa11.42□□□□□ -0.58
SHMT2-219ENST00000555563 A0A1B0GVI7 797 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 A0A1B0GW55 424 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 C22orf46C9J442 243 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 SYT7O43581 403 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 NDUFA2O43678 99 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 WBP4O75554 376 aaKnown RBP11.41□□□□□ -0.58
SHMT2-219ENST00000555563 FCN3O75636 299 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 RHBDL1O75783 438 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 IGHA1P01876 353 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 UBCP0CG48 685 aaKnown RBP11.41□□□□□ -0.58
SHMT2-219ENST00000555563 DUX4L2P0CJ85 424 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 DUX4L3P0CJ86 424 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 DUX4L4P0CJ87 422 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 DUX4L5P0CJ88 424 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 DUX4L6P0CJ89 424 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 DUX4L7P0CJ90 424 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 MUC1P15941 1255 aaPredicted RBP11.41□□□□□ -0.58
SHMT2-219ENST00000555563 ACTA2P62736 377 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 ACTG2P63267 376 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 SMN1Q16637 294 aaKnown RBP11.41□□□□□ -0.58
SHMT2-219ENST00000555563 CLVS2Q5SYC1 327 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 ZNF691Q5VV52 312 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 HAGHLQ6PII5 290 aaPredicted RBP11.41□□□□□ -0.58
SHMT2-219ENST00000555563 DUX4L9Q6RFH8 374 aaPredicted RBP11.41□□□□□ -0.58
SHMT2-219ENST00000555563 BTNL3Q6UXE8 466 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 OR5A2Q8NGI9 324 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 OR10Z1Q8NGY1 313 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 OR2G2Q8NGZ5 317 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 NANPQ8TBE9 248 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 CYGBQ8WWM9 190 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 RAB40AQ8WXH6 277 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 PELI1Q96FA3 418 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 MRI1Q9BV20 369 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 ALG8Q9BVK2 526 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 ERVK-18Q9QC07 812 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 DUX4Q9UBX2 424 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 AUP1Q9Y679 476 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 SVEP1Q4LDE5 3571 aa11.41□□□□□ -0.58
SHMT2-219ENST00000555563 PQLC2LA1A4F0 135 aa11.4□□□□□ -0.58
SHMT2-219ENST00000555563 ANKRD61A6NGH8 418 aa11.4□□□□□ -0.58
SHMT2-219ENST00000555563 RNF212BA8MTL3 300 aa11.4□□□□□ -0.58
SHMT2-219ENST00000555563 CASQ2O14958 399 aaPredicted RBP11.4□□□□□ -0.58
SHMT2-219ENST00000555563 TMPRSS2O15393 492 aa11.4□□□□□ -0.58
SHMT2-219ENST00000555563 AKR7A2O43488 359 aa11.4□□□□□ -0.58
SHMT2-219ENST00000555563 FADS2O95864 444 aaKnown RBP11.4□□□□□ -0.58
SHMT2-219ENST00000555563 NPY4RP50391 375 aa11.4□□□□□ -0.58
SHMT2-219ENST00000555563 NANOS3P60323 173 aaKnown RBP11.4□□□□□ -0.58
SHMT2-219ENST00000555563 PAX8Q06710 450 aa11.4□□□□□ -0.58
SHMT2-219ENST00000555563 RAB40BQ12829 278 aa11.4□□□□□ -0.58
SHMT2-219ENST00000555563 SCGB2A2Q13296 93 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms