RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 RNF170Q96K19 258 aa13.3□□□□□ -0.28
CCDC88C-209ENST00000554872 RAB3IPQ96QF0 476 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-209ENST00000554872 HIST1H2AAQ96QV6 131 aa13.3□□□□□ -0.28
CCDC88C-209ENST00000554872 OR51I2Q9H344 312 aa13.3□□□□□ -0.28
CCDC88C-209ENST00000554872 RIBC2Q9H4K1 309 aa13.3□□□□□ -0.28
CCDC88C-209ENST00000554872 ENPP5Q9UJA9 477 aa13.3□□□□□ -0.28
CCDC88C-209ENST00000554872 SNX5Q9Y5X3 404 aa13.3□□□□□ -0.28
CCDC88C-209ENST00000554872 V9GYS6 101 aa13.3□□□□□ -0.28
CCDC88C-209ENST00000554872 SAC3D1A6NKF1 404 aa13.29□□□□□ -0.28
CCDC88C-209ENST00000554872 P2RY10O00398 339 aa13.29□□□□□ -0.28
CCDC88C-209ENST00000554872 DVL1O14640 695 aa13.29□□□□□ -0.28
CCDC88C-209ENST00000554872 TMPRSS2O15393 492 aa13.29□□□□□ -0.28
CCDC88C-209ENST00000554872 IGHV4-38-2P0DP08 117 aa13.29□□□□□ -0.28
CCDC88C-209ENST00000554872 MTNR1AP48039 350 aa13.29□□□□□ -0.28
CCDC88C-209ENST00000554872 ALDH3A2P51648 485 aa13.29□□□□□ -0.28
CCDC88C-209ENST00000554872 ISL1P61371 349 aa13.29□□□□□ -0.28
CCDC88C-209ENST00000554872 BCL2L15Q5TBC7 163 aa13.29□□□□□ -0.28
CCDC88C-209ENST00000554872 LY6G5BQ8NDX9 201 aa13.29□□□□□ -0.28
CCDC88C-209ENST00000554872 CCDC54Q8NEL0 328 aa13.29□□□□□ -0.28
CCDC88C-209ENST00000554872 C8orf46Q8TAG6 207 aa13.29□□□□□ -0.28
CCDC88C-209ENST00000554872 EME1Q96AY2 570 aa13.29□□□□□ -0.28
CCDC88C-209ENST00000554872 APOL4Q9BPW4 351 aa13.29□□□□□ -0.28
CCDC88C-209ENST00000554872 RPUSD1Q9UJJ7 312 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-209ENST00000554872 OR52A1Q9UKL2 312 aa13.29□□□□□ -0.28
CCDC88C-209ENST00000554872 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.29□□□□□ -0.28
CCDC88C-209ENST00000554872 ORC6Q9Y5N6 252 aa13.29□□□□□ -0.28
CCDC88C-209ENST00000554872 IGHV3OR15-7A0A075B7D8 119 aa13.28□□□□□ -0.28
CCDC88C-209ENST00000554872 TRAV40A0A0B4J280 105 aa13.28□□□□□ -0.28
CCDC88C-209ENST00000554872 A0A1B0GTI1 187 aa13.28□□□□□ -0.28
CCDC88C-209ENST00000554872 DLGAP1O14490 977 aa13.28□□□□□ -0.28
CCDC88C-209ENST00000554872 EI24O14681 340 aa13.28□□□□□ -0.28
CCDC88C-209ENST00000554872 KRT8P05787 483 aa13.28□□□□□ -0.28
CCDC88C-209ENST00000554872 PRTN3P24158 256 aa13.28□□□□□ -0.28
CCDC88C-209ENST00000554872 GPM6AP51674 278 aa13.28□□□□□ -0.28
CCDC88C-209ENST00000554872 FGF12P61328 243 aa13.28□□□□□ -0.28
CCDC88C-209ENST00000554872 SNRPGP62308 76 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-209ENST00000554872 ZNF788Q6ZQV5 615 aa13.28□□□□□ -0.28
CCDC88C-209ENST00000554872 SSX6Q7RTT6 188 aa13.28□□□□□ -0.28
CCDC88C-209ENST00000554872 THAP5Q7Z6K1 395 aa13.28□□□□□ -0.28
CCDC88C-209ENST00000554872 COMMD2Q86X83 199 aa13.28□□□□□ -0.28
CCDC88C-209ENST00000554872 KIR3DL3Q8N743 410 aa13.28□□□□□ -0.28
CCDC88C-209ENST00000554872 SIGLECL1Q8N7X8 197 aa13.28□□□□□ -0.28
CCDC88C-209ENST00000554872 C22orf15Q8WYQ4 148 aa13.28□□□□□ -0.28
CCDC88C-209ENST00000554872 RPL3LQ92901 407 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-209ENST00000554872 FAM71F1Q96KD3 344 aaPredicted RBP13.28□□□□□ -0.28
CCDC88C-209ENST00000554872 ZNF48Q96MX3 618 aaPredicted RBP13.28□□□□□ -0.28
CCDC88C-209ENST00000554872 MS4A7Q9GZW8 240 aaPredicted RBP13.28□□□□□ -0.28
CCDC88C-209ENST00000554872 SIRPDQ9H106 197 aa13.28□□□□□ -0.28
CCDC88C-209ENST00000554872 KPTNQ9Y664 436 aa13.28□□□□□ -0.28
CCDC88C-209ENST00000554872 A0A1W2PQL4 384 aaPredicted RBP13.27□□□□□ -0.29
CCDC88C-209ENST00000554872 EBAG9O00559 213 aa13.27□□□□□ -0.29
CCDC88C-209ENST00000554872 FAHP16930 419 aa13.27□□□□□ -0.29
CCDC88C-209ENST00000554872 AMY2BP19961 511 aa13.27□□□□□ -0.29
CCDC88C-209ENST00000554872 PDCD1Q15116 288 aa13.27□□□□□ -0.29
CCDC88C-209ENST00000554872 OCLNQ16625 522 aa13.27□□□□□ -0.29
CCDC88C-209ENST00000554872 CLVS2Q5SYC1 327 aa13.27□□□□□ -0.29
CCDC88C-209ENST00000554872 GPR157Q5UAW9 335 aa13.27□□□□□ -0.29
CCDC88C-209ENST00000554872 MEDAGQ5VYS4 303 aa13.27□□□□□ -0.29
CCDC88C-209ENST00000554872 KCTD8Q6ZWB6 473 aa13.27□□□□□ -0.29
CCDC88C-209ENST00000554872 BTN2A1Q7KYR7 527 aa13.27□□□□□ -0.29
CCDC88C-209ENST00000554872 CATSPERDQ86XM0 798 aa13.27□□□□□ -0.29
CCDC88C-209ENST00000554872 BCL6BQ8N143 479 aaPredicted RBP13.27□□□□□ -0.29
CCDC88C-209ENST00000554872 OR14K1Q8NGZ2 314 aa13.27□□□□□ -0.29
CCDC88C-209ENST00000554872 ANGPTL6Q8NI99 470 aa13.27□□□□□ -0.29
CCDC88C-209ENST00000554872 ZNF671Q8TAW3 534 aa13.27□□□□□ -0.29
CCDC88C-209ENST00000554872 AQP3Q92482 292 aa13.27□□□□□ -0.29
CCDC88C-209ENST00000554872 C1orf147Q96MC9 270 aaPredicted RBP13.27□□□□□ -0.29
CCDC88C-209ENST00000554872 WDFY2Q96P53 400 aa13.27□□□□□ -0.29
CCDC88C-209ENST00000554872 TBX15Q96SF7 602 aa13.27□□□□□ -0.29
CCDC88C-209ENST00000554872 TTTY10Q9BZA0 68 aa13.27□□□□□ -0.29
CCDC88C-209ENST00000554872 IMPAD1Q9NX62 359 aa13.27□□□□□ -0.29
CCDC88C-209ENST00000554872 RASL12Q9NYN1 266 aa13.27□□□□□ -0.29
CCDC88C-209ENST00000554872 PIGLQ9Y2B2 252 aa13.27□□□□□ -0.29
CCDC88C-209ENST00000554872 DNAJC9-AS1A6NH13 148 aa13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 NKX6-3A6NJ46 265 aa13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 METTL15A6NJ78 407 aa13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 ZNF732B4DXR9 585 aa13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 J3QRE1 110 aa13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 SIGLEC5O15389 551 aa13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 NOS1APO75052 506 aaPredicted RBP13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 RGS9O75916 674 aaPredicted RBP13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 NRASP01111 189 aa13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 RNASE1P07998 156 aaKnown RBP13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 ACAA1P09110 424 aaPredicted RBP13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 CAV3P56539 151 aa13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 ACTG1P63261 375 aa13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 ACTC1P68032 377 aa13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 ACTA1P68133 377 aa13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 METTL11BQ5VVY1 283 aa13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 METAP1DQ6UB28 335 aaPredicted RBP13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 PLEKHG7Q6ZR37 379 aa13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 ZNF573Q86YE8 665 aa13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 EGFL6Q8IUX8 553 aa13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 PPP1R14AQ96A00 147 aa13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 C10orf35Q96D05 121 aa13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 MED30Q96HR3 178 aa13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 CCL13Q99616 98 aa13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 WDR13Q9H1Z4 485 aa13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 NLKQ9UBE8 527 aa13.26□□□□□ -0.29
CCDC88C-209ENST00000554872 DNAJB11Q9UBS4 358 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms