RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 KIAA0141Q14154 515 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-216ENST00000552909 Q499Y3 187 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 CT45A2Q5DJT8 189 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 RNFT1Q5M7Z0 435 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 ZNF324BQ6AW86 544 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-216ENST00000552909 AWAT2Q6E213 333 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 FRRS1Q6ZNA5 592 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-216ENST00000552909 LYG2Q86SG7 212 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 RANBP3LQ86VV4 465 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-216ENST00000552909 FAM24BQ8N5W8 94 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 TMEM229BQ8NBD8 167 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 RGP1Q92546 391 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-216ENST00000552909 HOXB13Q92826 284 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-216ENST00000552909 OR5B2Q96R09 309 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 PHB2Q99623 299 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 WWTR1Q9GZV5 400 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 ADAM19Q9H013 955 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 RGCCQ9H4X1 137 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 Q9N2J8 555 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 DEPPQ9NTK1 212 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 SIGLEC7Q9Y286 467 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 ZNF443Q9Y2A4 671 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-216ENST00000552909 FREM3P0C091 2139 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 TRAV27A0A087WT01 109 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 NPIPA5A0A0B4J1W7 369 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 A0A0G2JMM0 328 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 A0A1W2PPB8 328 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 A0A1W2PRS3 328 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 KIR3DP1A8MWS1 328 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 FAM157AC9JC47 383 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 C9JQL5 133 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 NPIPA7E9PJI5 369 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 M0QYG6 137 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 AGPAT2O15120 278 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 ZNHIT1O43257 154 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 MED6O75586 246 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 AK1P00568 194 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 IGKV1D-16P01601 117 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 MAS1P04201 325 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 CRHP06850 196 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 FCGR3AP08637 254 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 NPIPA8P0DM63 369 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 SLC2A1P11166 492 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 CD46P15529 392 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 CASP6P55212 293 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 GGTLC2Q14390 218 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 CLINT1Q14677 625 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 SCGB2B2Q4G0G5 96 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 DNLZQ5SXM8 178 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 EIF5AL1Q6IS14 154 aaKnown RBP6.76□□□□□ -1.33
LIMA1-216ENST00000552909 ZNF585AQ6P3V2 769 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 ARHGAP11AQ6P4F7 1023 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 NPSR1Q6W5P4 371 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 TMPRSS11FQ6ZWK6 438 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 ZAR1Q86SH2 424 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 LSRQ86X29 649 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-216ENST00000552909 SULF2Q8IWU5 870 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 ZNF441Q8N8Z8 693 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 OR5L2Q8NGL0 311 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 OR51A7Q8NH64 312 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 RPS4Y2Q8TD47 263 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 GPX8Q8TED1 209 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 ADIPOR1Q96A54 375 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 BPIFA2Q96DR5 249 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 ZNF350Q9GZX5 532 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 ICAM5Q9UMF0 924 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 ADAM18Q9Y3Q7 739 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 MED12Q93074 2177 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 ICE1Q9Y2F5 2266 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 TRBV6-7A0A0A0MS04 114 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 CENPVL1A0A0U1RR11 272 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 PINLYPA6NC86 204 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 IFITM10A6NMD0 228 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 EIF1AYO14602 144 aaKnown RBP6.75□□□□□ -1.33
LIMA1-216ENST00000552909 NME2P1O60361 137 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 CDC40O60508 579 aaKnown RBP eCLIP6.75□□□□□ -1.33
LIMA1-216ENST00000552909 CCL3P10147 92 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 ZBTB25P24278 435 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 SLC6A6P31641 620 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 LPAR6P43657 344 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 PPICP45877 212 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 EIF1AXP47813 144 aaKnown RBP6.75□□□□□ -1.33
LIMA1-216ENST00000552909 SLC6A9P48067 706 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 SOX2P48431 317 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 TDGF1P3P51864 188 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 EFNB2P52799 333 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 CD81P60033 236 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 NANOS3P60323 173 aaKnown RBP6.75□□□□□ -1.33
LIMA1-216ENST00000552909 EIF5AP63241 154 aaKnown RBP6.75□□□□□ -1.33
LIMA1-216ENST00000552909 FAM180AQ6UWF9 173 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 WDR88Q6ZMY6 472 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 ZNF836Q6ZNA1 936 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 PRR22Q8IZ63 422 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 ZNF619Q8N2I2 560 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 BCORP1Q8N888 145 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 OR52E2Q8NGJ4 325 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 OR51L1Q8NGJ5 315 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 MITD1Q8WV92 249 aa6.75□□□□□ -1.33
LIMA1-216ENST00000552909 SECTM1Q8WVN6 248 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms