RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 ZNF260Q3ZCT1 412 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 C1QTNF12Q5T7M4 302 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 SULF2Q8IWU5 870 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 FBXL14Q8N1E6 418 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 OR2V1Q8NHB1 315 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 ANGPTL6Q8NI99 470 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 PAQR8Q8TEZ7 354 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 SLC25A43Q8WUT9 341 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-215ENST00000552823 PPP1R1CQ8WVI7 109 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 FOXB1Q99853 325 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 URM1Q9BTM9 101 aaKnown RBP4.89□□□□□ -1.63
LIMA1-215ENST00000552823 ANGPTL4Q9BY76 406 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 NELFAQ9H3P2 528 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 TAS2R8Q9NYW2 309 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 SHPKQ9UHJ6 478 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 FLVCR1Q9Y5Y0 555 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 USF3Q68DE3 2245 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 NUP210LQ5VU65 1888 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 OR5H14A6NHG9 310 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 MCRIP1C9JLW8 97 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 SSX5O60225 188 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 IFNA7P01567 189 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 RRASP10301 218 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 ZNF16P17020 682 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-215ENST00000552823 ZNF24P17028 368 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 PTGFRP43088 359 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 MRPS10P82664 201 aaKnown RBP4.89□□□□□ -1.63
LIMA1-215ENST00000552823 ZNF92Q03936 586 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 STK11Q15831 433 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 MEX3BQ6ZN04 569 aaKnown RBP4.89□□□□□ -1.63
LIMA1-215ENST00000552823 SLC25A26Q70HW3 274 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 DOK3Q7L591 496 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 CNEP1R1Q8N9A8 125 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 SPTSSAQ969W0 71 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 ZNF700Q9H0M5 742 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 PLSCR2Q9NRY7 297 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 IL36RNQ9UBH0 155 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 OPN4Q9UHM6 478 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 FZR1Q9UM11 496 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 LSM5Q9Y4Y9 91 aaKnown RBP4.89□□□□□ -1.63
LIMA1-215ENST00000552823 MED12LQ86YW9 2145 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 LEUTXA8MZ59 168 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 G3V3Q6 166 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 GEMIN2O14893 280 aaKnown RBP4.89□□□□□ -1.63
LIMA1-215ENST00000552823 BET1O15155 118 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 EIF1BO60739 113 aaKnown RBP4.89□□□□□ -1.63
LIMA1-215ENST00000552823 SRSF10O75494 262 aaKnown RBP4.89□□□□□ -1.63
LIMA1-215ENST00000552823 TPOP07202 933 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 NPBWR2P48146 333 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 RSPO1Q2MKA7 263 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-215ENST00000552823 HIKESHIQ53FT3 197 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 SPIN3Q5JUX0 258 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 RFPL4BQ6ZWI9 263 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 SLC36A1Q7Z2H8 476 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 CXorf67Q86X51 503 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-215ENST00000552823 C17orf78Q8N4C9 275 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 FADS6Q8N9I5 356 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 SPERTQ8NA61 448 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 SUMF1Q8NBK3 374 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 SEMA6DQ8NFY4 1073 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 OR14K1Q8NGZ2 314 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 KCNG3Q8TAE7 436 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 RPS4Y2Q8TD47 263 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 CCDC107Q8WV48 283 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 DCUN1D4Q92564 292 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 FBXW5Q969U6 566 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 CPNE2Q96FN4 548 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-215ENST00000552823 ARPC5LQ9BPX5 153 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 CRIM1Q9NZV1 1036 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 MBD2Q9UBB5 411 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 GPR160Q9UJ42 338 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 SH3BGRL2Q9UJC5 107 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 LIPGQ9Y5X9 500 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 LRRC3CA6NJW4 275 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 HS3ST1O14792 307 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 PRAF2O60831 178 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 FBXO24O75426 580 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 RP2O75695 350 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 TGM6O95932 706 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 APOC3P02656 99 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 RLN2P04090 185 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 CD1AP06126 327 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 CSRP1P21291 193 aaKnown RBP4.88□□□□□ -1.63
LIMA1-215ENST00000552823 CASRP41180 1078 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 RAP2BP61225 183 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 PPIAP62937 165 aaKnown RBP4.88□□□□□ -1.63
LIMA1-215ENST00000552823 TOR2AQ5JU69 321 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 HACD4Q5VWC8 232 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 ZNF767PQ75MW2 155 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 OR51F2Q8NH61 342 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 OR1F12Q8NHA8 337 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 PSMF1Q92530 271 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 RDH5Q92781 318 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 PLPPR2Q96GM1 343 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 SGCZQ96LD1 299 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 HS3ST6Q96QI5 342 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 TAAR9Q96RI9 348 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 VRK1Q99986 396 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-215ENST00000552823 ZNF2Q9BSG1 426 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-215ENST00000552823 BCL2L14Q9BZR8 327 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms