RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 VSX2P58304 361 aaPredicted RBP5.04□□□□□ -1.6
VPS29-210ENST00000552130 LMO4P61968 165 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 DAZAP2Q15038 168 aaPredicted RBP5.04□□□□□ -1.6
VPS29-210ENST00000552130 RBMS2Q15434 407 aaKnown RBP5.04□□□□□ -1.6
VPS29-210ENST00000552130 TSNQ15631 228 aaKnown RBP5.04□□□□□ -1.6
VPS29-210ENST00000552130 PYCR3Q53H96 274 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 MUC21Q5SSG8 566 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 HIST2H3PS2Q5TEC6 136 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 C1orf195Q5TG92 126 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 CYB5R2Q6BCY4 276 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 CNIH2Q6PI25 160 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 RDH10Q8IZV5 341 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 STX19Q8N4C7 294 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 CBR4Q8N4T8 237 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 ZNF561Q8N587 486 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 ZFP41Q8N8Y5 198 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 SLC26A10Q8NG04 563 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 OR10G3Q8NGC4 313 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 OR6T1Q8NGN1 323 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 OR13D1Q8NGV5 346 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 NT5CQ8TCD5 201 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 TMED6Q8WW62 240 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 ASB13Q8WXK3 278 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 PPCDCQ96CD2 204 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 SMIM12Q96EX1 92 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 MED18Q9BUE0 208 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 QTRT1Q9BXR0 403 aaKnown RBP5.04□□□□□ -1.6
VPS29-210ENST00000552130 YTHDF1Q9BYJ9 559 aaKnown RBP5.04□□□□□ -1.6
VPS29-210ENST00000552130 OR11A1Q9GZK7 315 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 C11orf49Q9H6J7 331 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 RBM22Q9NW64 420 aaKnown RBP eCLIP5.04□□□□□ -1.6
VPS29-210ENST00000552130 ANXA10Q9UJ72 324 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 TMEM56-RWDD3S4R434 201 aa5.04□□□□□ -1.6
VPS29-210ENST00000552130 FER1L5A0AVI2 2057 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 IGHV3-20A0A0C4DH32 117 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 IGLV5-39A0A0G2JS06 123 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 RBMY1BA6NDE4 496 aaKnown RBP5.03□□□□□ -1.6
VPS29-210ENST00000552130 RBMY1EA6NEQ0 496 aaKnown RBP5.03□□□□□ -1.6
VPS29-210ENST00000552130 AIFM1O95831 613 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 IFNA1P01562 189 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 SNRPCP09234 159 aaKnown RBP5.03□□□□□ -1.6
VPS29-210ENST00000552130 RBMY1DP0C7P1 496 aaKnown RBP5.03□□□□□ -1.6
VPS29-210ENST00000552130 RBMY1A1P0DJD3 496 aaKnown RBP5.03□□□□□ -1.6
VPS29-210ENST00000552130 TAC1P20366 129 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 ADORA2BP29275 332 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 RPS9P46781 194 aaKnown RBP5.03□□□□□ -1.6
VPS29-210ENST00000552130 OR1D4P47884 311 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 CSRP3P50461 194 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 SNAP25P60880 206 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 ERVK-16P61578 105 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 MXD1Q05195 221 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 BAXQ07812 192 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 SMAGPQ0VAQ4 97 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 KLF17Q5JT82 389 aaPredicted RBP5.03□□□□□ -1.6
VPS29-210ENST00000552130 ZNF774Q6NX45 483 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 GLT6D1Q7Z4J2 308 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 ZNF676Q8N7Q3 588 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 OR5AP2Q8NGF4 316 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 OR10A6Q8NH74 314 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 RNASE11Q8TAA1 199 aaKnown RBP5.03□□□□□ -1.6
VPS29-210ENST00000552130 YIPF5Q969M3 257 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 C11orf52Q96A22 123 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 ST6GAL2Q96JF0 529 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 PGLYRP4Q96LB8 373 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 MEIS3Q99687 375 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 BIN3Q9NQY0 253 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 CALYQ9NYX4 217 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 ST3GAL6Q9Y274 331 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 SBDSQ9Y3A5 250 aaKnown RBP eCLIP5.03□□□□□ -1.6
VPS29-210ENST00000552130 UFC1Q9Y3C8 167 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 UBIAD1Q9Y5Z9 338 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 ARHGEF10O15013 1369 aa5.03□□□□□ -1.6
VPS29-210ENST00000552130 ZBED9Q6R2W3 1325 aa5.02□□□□□ -1.61
VPS29-210ENST00000552130 A0A087WUJ7 227 aa5.02□□□□□ -1.61
VPS29-210ENST00000552130 TRAV8-4A0A0B4J246 113 aa5.02□□□□□ -1.61
VPS29-210ENST00000552130 A0A0G2JMP0 313 aa5.02□□□□□ -1.61
VPS29-210ENST00000552130 DHRS7CA6NNS2 312 aa5.02□□□□□ -1.61
VPS29-210ENST00000552130 EVPLLA8MZ36 301 aa5.02□□□□□ -1.61
VPS29-210ENST00000552130 PPP5D1E7EU14 171 aa5.02□□□□□ -1.61
VPS29-210ENST00000552130 H7C1H1 209 aa5.02□□□□□ -1.61
VPS29-210ENST00000552130 CHP2O43745 196 aa5.02□□□□□ -1.61
VPS29-210ENST00000552130 CA11O75493 328 aa5.02□□□□□ -1.61
VPS29-210ENST00000552130 FOXH1O75593 365 aa5.02□□□□□ -1.61
VPS29-210ENST00000552130 RP2O75695 350 aa5.02□□□□□ -1.61
VPS29-210ENST00000552130 SLC25A27O95847 323 aa5.02□□□□□ -1.61
VPS29-210ENST00000552130 P01737 135 aa5.02□□□□□ -1.61
VPS29-210ENST00000552130 SLC35G6P0C7Q6 338 aa5.02□□□□□ -1.61
VPS29-210ENST00000552130 HOXB6P17509 224 aaKnown RBP5.02□□□□□ -1.61
VPS29-210ENST00000552130 TNFRSF1BP20333 461 aa5.02□□□□□ -1.61
VPS29-210ENST00000552130 SERPINB5P36952 375 aa5.02□□□□□ -1.61
VPS29-210ENST00000552130 SRP9P49458 86 aaKnown RBP5.02□□□□□ -1.61
VPS29-210ENST00000552130 PDLIM4P50479 330 aa5.02□□□□□ -1.61
VPS29-210ENST00000552130 PAX9P55771 341 aa5.02□□□□□ -1.61
VPS29-210ENST00000552130 PFN3P60673 137 aa5.02□□□□□ -1.61
VPS29-210ENST00000552130 LTB4RQ15722 352 aa5.02□□□□□ -1.61
VPS29-210ENST00000552130 C10orf25Q5T742 122 aa5.02□□□□□ -1.61
VPS29-210ENST00000552130 ZNF324BQ6AW86 544 aaPredicted RBP5.02□□□□□ -1.61
VPS29-210ENST00000552130 ZNF571Q7Z3V5 609 aaPredicted RBP5.02□□□□□ -1.61
VPS29-210ENST00000552130 FAM220AQ7Z4H9 259 aa5.02□□□□□ -1.61
VPS29-210ENST00000552130 OR4M2Q8NGB6 313 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms