RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 RNF13O43567 381 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 ENSAO43768 121 aaKnown RBP2.88□□□□□ -1.95
LIMA1-206ENST00000550611 TIMM8AO60220 97 aaPredicted RBP2.88□□□□□ -1.95
LIMA1-206ENST00000550611 SERPINI2O75830 405 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 OR6A2O95222 327 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 SLC2A10O95528 541 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 CH25HO95992 272 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 CYB5R3P00387 301 aaPredicted RBP2.88□□□□□ -1.95
LIMA1-206ENST00000550611 IGF2P01344 180 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 IGHV1-69P01742 117 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 SERPINE1P05121 402 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 LIPFP07098 398 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 SFTPBP07988 381 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 CST2P09228 141 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 COX5BP10606 129 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 RPS2P15880 293 aaKnown RBP2.88□□□□□ -1.95
LIMA1-206ENST00000550611 ACADSP16219 412 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 CCNOP22674 350 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 KIR2DS4P43632 304 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 PITPNBP48739 271 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 CENPAP49450 140 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 ERFP50548 548 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 EFNB2P52799 333 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 NME5P56597 212 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 HSF2Q03933 536 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 BST1Q10588 318 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 MRPL28Q13084 256 aaKnown RBP2.88□□□□□ -1.95
LIMA1-206ENST00000550611 ENDOGQ14249 297 aaKnown RBP2.88□□□□□ -1.95
LIMA1-206ENST00000550611 HERPUD1Q15011 391 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 NPTX1Q15818 432 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 FAM201AQ5SY85 155 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 ZFAND6Q6FIF0 208 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 SLC35E4Q6ICL7 350 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 REEP3Q6NUK4 255 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 ZNF613Q6PF04 617 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 C16orf54Q6UWD8 224 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 FBXW12Q6X9E4 464 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 GDPGP1Q6ZNW5 385 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 SLC16A12Q6ZSM3 486 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 Q6ZTK2 550 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 HAPLN4Q86UW8 402 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 PTOV1Q86YD1 416 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 NUDCD3Q8IVD9 361 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 MSRB3Q8IXL7 192 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 WFDC9Q8NEX5 89 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 NOXO1Q8NFA2 376 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 OR2Z1Q8NG97 314 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 GPR32P1Q8NGA4 272 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 OR8B3Q8NGG8 313 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 OR4D11Q8NGI4 311 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 VANGL1Q8TAA9 524 aaPredicted RBP2.88□□□□□ -1.95
LIMA1-206ENST00000550611 ZNF420Q8TAQ5 688 aaPredicted RBP2.88□□□□□ -1.95
LIMA1-206ENST00000550611 LRRC8CQ8TDW0 803 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 GIMAP1Q8WWP7 306 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP2.88□□□□□ -1.95
LIMA1-206ENST00000550611 PTP4A1Q93096 173 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 OTULINQ96BN8 352 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 ITCHQ96J02 903 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 MAGEB18Q96M61 343 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 OR2V2Q96R30 315 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 OR8B2Q96RD0 313 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 PRSS27Q9BQR3 290 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 TRIM15Q9C019 465 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 FAM107BQ9H098 131 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 WDR55Q9H6Y2 383 aaPredicted RBP2.88□□□□□ -1.95
LIMA1-206ENST00000550611 EVA1AQ9H8M9 152 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 ELOVL3Q9HB03 270 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 RANGRFQ9HD47 186 aaPredicted RBP2.88□□□□□ -1.95
LIMA1-206ENST00000550611 CCNB1IP1Q9NPC3 277 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 MEPEQ9NQ76 525 aaPredicted RBP2.88□□□□□ -1.95
LIMA1-206ENST00000550611 NANSQ9NR45 359 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 SDR39U1Q9NRG7 319 aaPredicted RBP2.88□□□□□ -1.95
LIMA1-206ENST00000550611 NECAP2Q9NVZ3 263 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 SLC25A37Q9NYZ2 338 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 CLN8Q9UBY8 286 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 ZNF229Q9UJW7 825 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 RPS6KA6Q9UK32 745 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 TMEM5Q9Y2B1 443 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 RRP15Q9Y3B9 282 aaKnown RBP2.88□□□□□ -1.95
LIMA1-206ENST00000550611 TIMM10BQ9Y5J6 103 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 A3GALT2U3KPV4 340 aa2.88□□□□□ -1.95
LIMA1-206ENST00000550611 PRORSD1PA6NEY8 169 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 MLNRO43193 412 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 CHP2O43745 196 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 SLC22A3O75751 556 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 PTBP3O95758 552 aaKnown RBP2.87□□□□□ -1.95
LIMA1-206ENST00000550611 ZNF182P17025 639 aaPredicted RBP2.87□□□□□ -1.95
LIMA1-206ENST00000550611 GPX2P18283 190 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 FUT1P19526 365 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 GSTM3P21266 225 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 LAP3P28838 519 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 DCTDP32321 178 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 TGFBR2P37173 567 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 AQP2P41181 271 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 RFX2P48378 723 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 SLC1A6P48664 564 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 MRPL19P49406 292 aaKnown RBP2.87□□□□□ -1.95
LIMA1-206ENST00000550611 NPY4RP50391 375 aa2.87□□□□□ -1.95
LIMA1-206ENST00000550611 POLR2JP52435 117 aaKnown RBP2.87□□□□□ -1.95
LIMA1-206ENST00000550611 ARHGDIAP52565 204 aa2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms