RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 ELF3P78545 371 aaPredicted RBP11.78□□□□□ -0.52
USP28-209ENST00000540925 C11orf91Q3C1V1 193 aa11.78□□□□□ -0.52
USP28-209ENST00000540925 BCL2L15Q5TBC7 163 aa11.78□□□□□ -0.52
USP28-209ENST00000540925 ATPAF1Q5TC12 328 aaPredicted RBP11.78□□□□□ -0.52
USP28-209ENST00000540925 STUMQ69YW2 141 aa11.78□□□□□ -0.52
USP28-209ENST00000540925 ENTHD1Q8IYW4 607 aa11.78□□□□□ -0.52
USP28-209ENST00000540925 OR10H4Q8NGA5 316 aa11.78□□□□□ -0.52
USP28-209ENST00000540925 OR5A2Q8NGI9 324 aa11.78□□□□□ -0.52
USP28-209ENST00000540925 RHOXF1Q8NHV9 184 aa11.78□□□□□ -0.52
USP28-209ENST00000540925 ZFAND2BQ8WV99 257 aa11.78□□□□□ -0.52
USP28-209ENST00000540925 SEH1LQ96EE3 360 aa11.78□□□□□ -0.52
USP28-209ENST00000540925 RNF170Q96K19 258 aa11.78□□□□□ -0.52
USP28-209ENST00000540925 FAM71F1Q96KD3 344 aaPredicted RBP11.78□□□□□ -0.52
USP28-209ENST00000540925 NUDT16L1Q9BRJ7 211 aaKnown RBP11.78□□□□□ -0.52
USP28-209ENST00000540925 ENPP5Q9UJA9 477 aa11.78□□□□□ -0.52
USP28-209ENST00000540925 SLC22A13Q9Y226 551 aa11.78□□□□□ -0.52
USP28-209ENST00000540925 PIGLQ9Y2B2 252 aa11.78□□□□□ -0.52
USP28-209ENST00000540925 EXOGQ9Y2C4 368 aaKnown RBP11.78□□□□□ -0.52
USP28-209ENST00000540925 TENM1Q9UKZ4 2725 aa11.78□□□□□ -0.52
USP28-209ENST00000540925 IGHV3OR15-7A0A075B7D8 119 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 A0A1B0GW55 424 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 OR5B21A6NL26 309 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 ZNF732B4DXR9 585 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 SLC16A6O15403 523 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 PLATP00750 562 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 DUX4L2P0CJ85 424 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 DUX4L3P0CJ86 424 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 DUX4L4P0CJ87 422 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 DUX4L5P0CJ88 424 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 DUX4L6P0CJ89 424 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 DUX4L7P0CJ90 424 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 TGM4P49221 684 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 GPM6AP51674 278 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 MICBQ29980 383 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 CDONQ4KMG0 1287 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 WDR38Q5JTN6 314 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 CEP78Q5JTW2 689 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 DUX4L9Q6RFH8 374 aaPredicted RBP11.77□□□□□ -0.53
USP28-209ENST00000540925 ZBTB49Q6ZSB9 765 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 C9orf139Q6ZV77 190 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 PRSS35Q8N3Z0 413 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 YIPF7Q8N8F6 280 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 SLC6A7Q99884 636 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 MRI1Q9BV20 369 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 WDR13Q9H1Z4 485 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 OCEL1Q9H607 264 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 ERVK-18Q9QC07 812 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 DUX4Q9UBX2 424 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 AASSQ9UDR5 926 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 NUP50Q9UKX7 468 aa11.77□□□□□ -0.53
USP28-209ENST00000540925 P2RY10O00398 339 aa11.76□□□□□ -0.53
USP28-209ENST00000540925 DVL1O14640 695 aa11.76□□□□□ -0.53
USP28-209ENST00000540925 ENSAO43768 121 aaKnown RBP11.76□□□□□ -0.53
USP28-209ENST00000540925 MTRF1O75570 445 aaKnown RBP11.76□□□□□ -0.53
USP28-209ENST00000540925 RHBDL1O75783 438 aa11.76□□□□□ -0.53
USP28-209ENST00000540925 RPP14O95059 124 aaKnown RBP11.76□□□□□ -0.53
USP28-209ENST00000540925 IGHV4-38-2P0DP08 117 aa11.76□□□□□ -0.53
USP28-209ENST00000540925 MMP9P14780 707 aa11.76□□□□□ -0.53
USP28-209ENST00000540925 ARMCX4Q5H9R4 360 aa11.76□□□□□ -0.53
USP28-209ENST00000540925 CD276Q5ZPR3 534 aa11.76□□□□□ -0.53
USP28-209ENST00000540925 FDX2Q6P4F2 183 aa11.76□□□□□ -0.53
USP28-209ENST00000540925 BTNL3Q6UXE8 466 aa11.76□□□□□ -0.53
USP28-209ENST00000540925 DOK3Q7L591 496 aa11.76□□□□□ -0.53
USP28-209ENST00000540925 COMMD2Q86X83 199 aa11.76□□□□□ -0.53
USP28-209ENST00000540925 FGFRL1Q8N441 504 aa11.76□□□□□ -0.53
USP28-209ENST00000540925 ANGPTL6Q8NI99 470 aa11.76□□□□□ -0.53
USP28-209ENST00000540925 ZNF418Q8TF45 676 aaPredicted RBP11.76□□□□□ -0.53
USP28-209ENST00000540925 AQP3Q92482 292 aa11.76□□□□□ -0.53
USP28-209ENST00000540925 RNFT2Q96EX2 444 aa11.76□□□□□ -0.53
USP28-209ENST00000540925 ZNF649Q9BS31 505 aa11.76□□□□□ -0.53
USP28-209ENST00000540925 SUCNR1Q9BXA5 334 aa11.76□□□□□ -0.53
USP28-209ENST00000540925 DNTTIP1Q9H147 329 aa11.76□□□□□ -0.53
USP28-209ENST00000540925 RASSF4Q9H2L5 321 aa11.76□□□□□ -0.53
USP28-209ENST00000540925 ESM1Q9NQ30 184 aa11.76□□□□□ -0.53
USP28-209ENST00000540925 ACOXLQ9NUZ1 547 aa11.76□□□□□ -0.53
USP28-209ENST00000540925 FAM118AQ9NWS6 357 aa11.76□□□□□ -0.53
USP28-209ENST00000540925 ZNF69Q9UC07 566 aa11.76□□□□□ -0.53
USP28-209ENST00000540925 GMPPBQ9Y5P6 360 aa11.76□□□□□ -0.53
USP28-209ENST00000540925 LOC100130705A0A1B0GUX0 176 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 PQLC2LA1A4F0 135 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 TMPRSS2O15393 492 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 NRASP01111 189 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 KIR3DL2P43630 455 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 ACTC1P68032 377 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 ACTA1P68133 377 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 ZNF91Q05481 1191 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 ZSCAN26Q16670 478 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 TP53I3Q53FA7 332 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 DMRTC1Q5HYR2 192 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 CLVS2Q5SYC1 327 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 ZNF788Q6ZQV5 615 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 MOB3CQ70IA8 216 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 KCTD20Q7Z5Y7 419 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 THAP5Q7Z6K1 395 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 FAM216BQ8N7L0 139 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 ZDHHC22Q8N966 263 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 LY6G5BQ8NDX9 201 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 APH1BQ8WW43 257 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 LGALS12Q96DT0 336 aa11.75□□□□□ -0.53
USP28-209ENST00000540925 RDH12Q96NR8 316 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms