RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 ORMDL3Q8N138 153 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 DRAM1Q8N682 238 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 FBXO36Q8NEA4 188 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 ZNF680Q8NEM1 530 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 CIRBP-AS1Q8TBR5 109 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 PHF10Q8WUB8 498 aaKnown RBP1.53□□□□□ -2.16
CD44-238ENST00000534296 ESR2Q92731 530 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 TOP1MTQ969P6 601 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 KIAA1143Q96AT1 154 aaPredicted RBP1.53□□□□□ -2.16
CD44-238ENST00000534296 YIPF6Q96EC8 236 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 RNF170Q96K19 258 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 KCNS1Q96KK3 526 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 TSNAXQ99598 290 aaKnown RBP1.53□□□□□ -2.16
CD44-238ENST00000534296 NAPGQ99747 312 aaPredicted RBP1.53□□□□□ -2.16
CD44-238ENST00000534296 RHOXF2Q9BQY4 288 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 MRPL20Q9BYC9 149 aaKnown RBP1.53□□□□□ -2.16
CD44-238ENST00000534296 ZSCAN16Q9H4T2 348 aaPredicted RBP1.53□□□□□ -2.16
CD44-238ENST00000534296 CYP3A43Q9HB55 503 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 IL37Q9NZH6 218 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 KPTNQ9Y664 436 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 PCM1Q15154 2024 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 TMEM131Q92545 1883 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 NEURL4Q96JN8 1562 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 KIF27Q86VH2 1401 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 IGHV3-72A0A0B4J1Y9 119 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 TRAV8-6A0A0B4J262 113 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 IGKV2-24A0A0C4DH68 120 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 C9JQL5 133 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 LGALS9O00182 355 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 MFNGO00587 321 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 ERI3O43414 337 aaKnown RBP1.52□□□□□ -2.17
CD44-238ENST00000534296 CTNSO60931 367 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 CBR3O75828 277 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 PTTG1O95997 202 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 IGKV4-1P06312 121 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 STAG3L2P0CL84 134 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 MLNP12872 115 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 GABRG2P18507 467 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 CD9P21926 228 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 HLA-DMAP28067 261 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 LOXP28300 417 aaPredicted RBP1.52□□□□□ -2.17
CD44-238ENST00000534296 IDH2P48735 452 aaKnown RBP1.52□□□□□ -2.17
CD44-238ENST00000534296 TAS2R39P59534 338 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 RPL18AQ02543 176 aaKnown RBP1.52□□□□□ -2.17
CD44-238ENST00000534296 INCA1Q0VD86 236 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 MOBPQ13875 183 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 MAD2L1BPQ15013 274 aaPredicted RBP1.52□□□□□ -2.17
CD44-238ENST00000534296 TTMPQ5BVD1 217 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 CPTPQ5TA50 214 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 DUPD1Q68J44 220 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 TRMT10CQ7L0Y3 403 aaKnown RBP1.52□□□□□ -2.17
CD44-238ENST00000534296 PDPNQ86YL7 162 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 OSR2Q8N2R0 312 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 TRIML2Q8N7C3 387 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 ZNF321PQ8N8H1 164 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 CYB561A3Q8NBI2 242 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 OR5AR1Q8NGP9 310 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 HGDQ93099 445 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 CPNE4Q96A23 557 aaPredicted RBP1.52□□□□□ -2.17
CD44-238ENST00000534296 IP6K3Q96PC2 410 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 BCL7BQ9BQE9 202 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 AGMATQ9BSE5 352 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 STMN4Q9H169 189 aaPredicted RBP1.52□□□□□ -2.17
CD44-238ENST00000534296 ARV1Q9H2C2 271 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 ZNF442Q9H7R0 627 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 PRSS16Q9NQE7 514 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 FBXO8Q9NRD0 319 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 HEBP1Q9NRV9 189 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 INIPQ9NRY2 104 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 HMGXB4Q9UGU5 601 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 RHBDD3Q9Y3P4 386 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 CHTOPQ9Y3Y2 248 aaKnown RBP1.52□□□□□ -2.17
CD44-238ENST00000534296 OR51B2Q9Y5P1 312 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 SLC22A7Q9Y694 548 aa1.52□□□□□ -2.17
CD44-238ENST00000534296 BZW2Q9Y6E2 419 aaKnown RBP1.52□□□□□ -2.17
CD44-238ENST00000534296 JCADQ9P266 1359 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 SYNRGQ9UMZ2 1314 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 ARPC4-TTLL3A0A0A6YYG9 625 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 LOC100653049A0A140TA62 436 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 A0A1W2PPV4 95 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 E7EWF7 191 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 GATCO43716 136 aaKnown RBP1.51□□□□□ -2.17
CD44-238ENST00000534296 OR7C2O60412 319 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 KRT34O76011 436 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 PLEKHA8P1O95397 391 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 NRASP01111 189 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 HRASP01112 189 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 KRASP01116 189 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 IGLV7-43P04211 117 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 KLK1P06870 262 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 SNRPAP09012 282 aaKnown RBP1.51□□□□□ -2.17
CD44-238ENST00000534296 CCDC172P0C7W6 258 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 THRAP10827 490 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 POLR2IP36954 125 aaKnown RBP1.51□□□□□ -2.17
CD44-238ENST00000534296 CSKP41240 450 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 DSTNP60981 165 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 GRB2P62993 217 aaKnown RBP1.51□□□□□ -2.17
CD44-238ENST00000534296 ATP5G2Q06055 141 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 LUZP6Q538Z0 58 aa1.51□□□□□ -2.17
CD44-238ENST00000534296 STEAP4Q687X5 459 aa1.51□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms