RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 RAB6AP20340 208 aa18.03■□□□□ 0.48
VPS28-208ENST00000527797 PTAFRP25105 342 aa18.03■□□□□ 0.48
VPS28-208ENST00000527797 GCH1P30793 250 aa18.03■□□□□ 0.48
VPS28-208ENST00000527797 PITPNAQ00169 270 aa18.03■□□□□ 0.48
VPS28-208ENST00000527797 IGFBP7Q16270 282 aa18.03■□□□□ 0.48
VPS28-208ENST00000527797 C4orf17Q53FE4 359 aa18.03■□□□□ 0.48
VPS28-208ENST00000527797 OR8H2Q8N162 312 aa18.03■□□□□ 0.48
VPS28-208ENST00000527797 PHF21AQ96BD5 680 aa18.03■□□□□ 0.48
VPS28-208ENST00000527797 WFIKKN1Q96NZ8 548 aa18.03■□□□□ 0.48
VPS28-208ENST00000527797 DIABLOQ9NR28 239 aa18.03■□□□□ 0.48
VPS28-208ENST00000527797 FBLN5Q9UBX5 448 aa18.03■□□□□ 0.48
VPS28-208ENST00000527797 MRPS7Q9Y2R9 242 aaKnown RBP18.03■□□□□ 0.48
VPS28-208ENST00000527797 IQCF6A8MYZ5 107 aa18.02■□□□□ 0.48
VPS28-208ENST00000527797 NAT2P11245 290 aa18.02■□□□□ 0.48
VPS28-208ENST00000527797 MPV17P39210 176 aa18.02■□□□□ 0.48
VPS28-208ENST00000527797 ALDH3B1P43353 468 aa18.02■□□□□ 0.48
VPS28-208ENST00000527797 QRFPP83859 136 aa18.02■□□□□ 0.48
VPS28-208ENST00000527797 IFITM3Q01628 133 aa18.02■□□□□ 0.48
VPS28-208ENST00000527797 SNTB2Q13425 540 aaKnown RBP18.02■□□□□ 0.48
VPS28-208ENST00000527797 MBNL2Q5VZF2 373 aaKnown RBP18.02■□□□□ 0.48
VPS28-208ENST00000527797 OR10K2Q6IF99 312 aa18.02■□□□□ 0.48
VPS28-208ENST00000527797 RGS7BPQ6MZT1 257 aaPredicted RBP18.02■□□□□ 0.48
VPS28-208ENST00000527797 OR2W3Q7Z3T1 314 aa18.02■□□□□ 0.48
VPS28-208ENST00000527797 OR5A2Q8NGI9 324 aa18.02■□□□□ 0.48
VPS28-208ENST00000527797 ATG5Q9H1Y0 275 aa18.02■□□□□ 0.48
VPS28-208ENST00000527797 NGBQ9NPG2 151 aa18.02■□□□□ 0.48
VPS28-208ENST00000527797 KCNJ16Q9NPI9 418 aa18.02■□□□□ 0.48
VPS28-208ENST00000527797 IGKV1-27A0A075B6S5 117 aa18.01■□□□□ 0.47
VPS28-208ENST00000527797 LILRA1O75019 489 aa18.01■□□□□ 0.47
VPS28-208ENST00000527797 CTAG2O75638 210 aa18.01■□□□□ 0.47
VPS28-208ENST00000527797 TMEM225BP0DP42 221 aa18.01■□□□□ 0.47
VPS28-208ENST00000527797 CDK2P24941 298 aa18.01■□□□□ 0.47
VPS28-208ENST00000527797 UQCRFS1P47985 274 aa18.01■□□□□ 0.47
VPS28-208ENST00000527797 FABP6P51161 128 aa18.01■□□□□ 0.47
VPS28-208ENST00000527797 ZP1P60852 638 aa18.01■□□□□ 0.47
VPS28-208ENST00000527797 TMEM69Q5SWH9 247 aa18.01■□□□□ 0.47
VPS28-208ENST00000527797 IZUMO1Q8IYV9 350 aa18.01■□□□□ 0.47
VPS28-208ENST00000527797 Q8N402 240 aa18.01■□□□□ 0.47
VPS28-208ENST00000527797 KCNG3Q8TAE7 436 aa18.01■□□□□ 0.47
VPS28-208ENST00000527797 RADILQ96JH8 1075 aa18.01■□□□□ 0.47
VPS28-208ENST00000527797 C14orf119Q9NWQ9 140 aa18.01■□□□□ 0.47
VPS28-208ENST00000527797 PURGQ9UJV8 347 aaKnown RBP18.01■□□□□ 0.47
VPS28-208ENST00000527797 PQLC2LA1A4F0 135 aa18.01■□□□□ 0.47
VPS28-208ENST00000527797 TMEM14DPA8MWL7 114 aa18.01■□□□□ 0.47
VPS28-208ENST00000527797 CA6P23280 308 aa18.01■□□□□ 0.47
VPS28-208ENST00000527797 MMP15P51511 669 aa18.01■□□□□ 0.47
VPS28-208ENST00000527797 HPSE2Q8WWQ2 592 aa18.01■□□□□ 0.47
VPS28-208ENST00000527797 OR5P3Q8WZ94 311 aa18.01■□□□□ 0.47
VPS28-208ENST00000527797 RNF170Q96K19 258 aa18.01■□□□□ 0.47
VPS28-208ENST00000527797 C1orf147Q96MC9 270 aaPredicted RBP18.01■□□□□ 0.47
VPS28-208ENST00000527797 ABHD1Q96SE0 405 aa18.01■□□□□ 0.47
VPS28-208ENST00000527797 METTL21EPA6NDL7 271 aa18■□□□□ 0.47
VPS28-208ENST00000527797 ATP6V1G2-DDX39BF2Z307 99 aa18■□□□□ 0.47
VPS28-208ENST00000527797 XRCC3O43542 346 aa18■□□□□ 0.47
VPS28-208ENST00000527797 TPPPO94811 219 aa18■□□□□ 0.47
VPS28-208ENST00000527797 KITLGP21583 273 aa18■□□□□ 0.47
VPS28-208ENST00000527797 GLRXP35754 106 aa18■□□□□ 0.47
VPS28-208ENST00000527797 RPS23P62266 143 aaKnown RBP18■□□□□ 0.47
VPS28-208ENST00000527797 UNC119Q13432 240 aa18■□□□□ 0.47
VPS28-208ENST00000527797 BAK1Q16611 211 aa18■□□□□ 0.47
VPS28-208ENST00000527797 ALKBH6Q3KRA9 238 aa18■□□□□ 0.47
VPS28-208ENST00000527797 C1QL2Q7Z5L3 287 aa18■□□□□ 0.47
VPS28-208ENST00000527797 C15orf40Q8WUR7 153 aa18■□□□□ 0.47
VPS28-208ENST00000527797 FAM46BQ96A09 425 aa18■□□□□ 0.47
VPS28-208ENST00000527797 ITPKCQ96DU7 683 aa18■□□□□ 0.47
VPS28-208ENST00000527797 CST11Q9H112 138 aa18■□□□□ 0.47
VPS28-208ENST00000527797 METTL9Q9H1A3 318 aa18■□□□□ 0.47
VPS28-208ENST00000527797 ELL3Q9HB65 397 aaPredicted RBP18■□□□□ 0.47
VPS28-208ENST00000527797 NDRG3Q9UGV2 375 aa18■□□□□ 0.47
VPS28-208ENST00000527797 NOP16Q9Y3C1 178 aaKnown RBP18■□□□□ 0.47
VPS28-208ENST00000527797 ZNF732B4DXR9 585 aa17.99■□□□□ 0.47
VPS28-208ENST00000527797 MNDAP41218 407 aa17.99■□□□□ 0.47
VPS28-208ENST00000527797 GPM6AP51674 278 aa17.99■□□□□ 0.47
VPS28-208ENST00000527797 NKX6-1P78426 367 aaPredicted RBP17.99■□□□□ 0.47
VPS28-208ENST00000527797 SLC22A6Q4U2R8 563 aa17.99■□□□□ 0.47
VPS28-208ENST00000527797 STEAP3Q658P3 488 aa17.99■□□□□ 0.47
VPS28-208ENST00000527797 LYSMD2Q8IV50 215 aa17.99■□□□□ 0.47
VPS28-208ENST00000527797 OR8G5Q8NG78 346 aa17.99■□□□□ 0.47
VPS28-208ENST00000527797 OR8S1Q8NH09 359 aa17.99■□□□□ 0.47
VPS28-208ENST00000527797 DVL3Q92997 716 aaPredicted RBP17.99■□□□□ 0.47
VPS28-208ENST00000527797 FGF23Q9GZV9 251 aaPredicted RBP17.99■□□□□ 0.47
VPS28-208ENST00000527797 FZR1Q9UM11 496 aa17.99■□□□□ 0.47
VPS28-208ENST00000527797 DPRXA6NFQ7 191 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 OR5B21A6NL26 309 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 SPRY1O43609 319 aaPredicted RBP17.98■□□□□ 0.47
VPS28-208ENST00000527797 TIMM8AO60220 97 aaPredicted RBP17.98■□□□□ 0.47
VPS28-208ENST00000527797 CRTAPO75718 401 aaPredicted RBP17.98■□□□□ 0.47
VPS28-208ENST00000527797 PLATP00750 562 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 CSF3P09919 207 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 IL7P13232 177 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 TAS2R20P59543 309 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 PDZK1IP1Q13113 114 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 CDSNQ15517 529 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 FAM189A2Q15884 450 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 BIVMQ86UB2 503 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 PIAS4Q8N2W9 510 aaPredicted RBP17.98■□□□□ 0.47
VPS28-208ENST00000527797 GAL3ST1Q99999 423 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 TMEM100Q9NV29 134 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 A0A0A6YYH2 397 aa17.98■□□□□ 0.47
VPS28-208ENST00000527797 ISPDA4D126 451 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms