RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 DHRS4L2Q6PKH6 230 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 NANOGNBQ7Z5D8 188 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 ZER1Q7Z7L7 766 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 FUNDC1Q8IVP5 155 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 MUC15Q8N387 334 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 ICA1LQ8NDH6 482 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 OR1K1Q8NGR3 316 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 OR10A6Q8NH74 314 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 RASSF5Q8WWW0 418 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 LZICQ8WZA0 190 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 SLC35B4Q969S0 331 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 TMEM45BQ96B21 275 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 BSCL2Q96G97 398 aaPredicted RBP2.96□□□□□ -1.94
NUP54-212ENST00000513248 ANKRD27Q96NW4 1050 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 OXGR1Q96P68 337 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 SLC38A2Q96QD8 506 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 CGREF1Q99674 301 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 SMR3AQ99954 134 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 DHRS9Q9BPW9 319 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 EMC6Q9BV81 110 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 PAPOLGQ9BWT3 736 aaKnown RBP2.96□□□□□ -1.94
NUP54-212ENST00000513248 CACNG6Q9BXT2 260 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 NDEL1Q9GZM8 345 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 FAM107BQ9H098 131 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 NSRP1Q9H0G5 558 aaKnown RBP2.96□□□□□ -1.94
NUP54-212ENST00000513248 C12orf10Q9HB07 376 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 RAB9BQ9NP90 201 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 NANSQ9NR45 359 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 SLC17A5Q9NRA2 495 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 YAE1D1Q9NRH1 226 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 GPR173Q9NS66 373 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 CBLN4Q9NTU7 201 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 FGFR1OP2Q9NVK5 253 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 SLC25A37Q9NYZ2 338 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 CTSZQ9UBR2 303 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 UBQLN2Q9UHD9 624 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 SH3GLB1Q9Y371 365 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 SLC25A15Q9Y619 301 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 FKBP7Q9Y680 259 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 SPENQ96T58 3664 aaKnown RBP2.96□□□□□ -1.94
NUP54-212ENST00000513248 POLEQ07864 2286 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 DIDO1Q9BTC0 2240 aaKnown RBP2.96□□□□□ -1.94
NUP54-212ENST00000513248 CSMD1Q96PZ7 3565 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 NINQ8N4C6 2090 aa2.96□□□□□ -1.94
NUP54-212ENST00000513248 DSPPQ9NZW4 1301 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 PHF3Q92576 2039 aaKnown RBP2.95□□□□□ -1.94
NUP54-212ENST00000513248 EML6Q6ZMW3 1958 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 A0A087WUJ7 227 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 A0A1W2PRG6 482 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 SH3PXD2BA1X283 911 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 A4D1N5 150 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 TRAPPC13A5PLN9 417 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 ZNF732B4DXR9 585 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 E7EQL1 145 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 ATP6V1G2-DDX39BF2Z307 99 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 CHP2O43745 196 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 TPST1O60507 370 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 SHOX2O60902 331 aaPredicted RBP2.95□□□□□ -1.94
NUP54-212ENST00000513248 MFN2O95140 757 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 FARS2O95363 451 aaKnown RBP2.95□□□□□ -1.94
NUP54-212ENST00000513248 ZNF682O95780 498 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 LY6G6DO95868 133 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 NPPAP01160 153 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 SOD3P08294 240 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 HTR2AP28223 471 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 LOXP28300 417 aaPredicted RBP2.95□□□□□ -1.94
NUP54-212ENST00000513248 ARR3P36575 388 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 MRPL19P49406 292 aaKnown RBP2.95□□□□□ -1.94
NUP54-212ENST00000513248 BIDP55957 195 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 H3F3AP84243 136 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 HSF2Q03933 536 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 PAX8Q06710 450 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 DMTNQ08495 405 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 PUDPQ08623 228 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 CD47Q08722 323 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 GPR50Q13585 617 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 SELPLGQ14242 412 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 MAPK11Q15759 364 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 FAM189A2Q15884 450 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 DUSP7Q16829 419 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 GSG1Q2KHT4 349 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 FGD3Q5JSP0 725 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 NANOGP8Q6NSW7 305 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 ZNF544Q6NX49 715 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 TMEM53Q6P2H8 277 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 C11orf88Q6PI97 169 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 HDDC2Q7Z4H3 204 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 ARPINQ7Z6K5 226 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 CYP4Z1Q86W10 505 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 CARM1Q86X55 608 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 MSRB3Q8IXL7 192 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 CCDC36Q8IYA8 594 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 OR4F15Q8NGB8 312 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 OR5J2Q8NH18 312 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 ADAMTS16Q8TE57 1224 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 LRRC58Q96CX6 371 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 RCN3Q96D15 328 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 SGTBQ96EQ0 304 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 SLC41A3Q96GZ6 507 aa2.95□□□□□ -1.94
NUP54-212ENST00000513248 REG4Q9BYZ8 158 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 133.1 ms