RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 FLOT2Q14254 428 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 HERPUD1Q15011 391 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 ARL6IP1Q15041 203 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 TAF1AQ15573 450 aaPredicted RBP2.89□□□□□ -1.95
NUP54-209ENST00000510569 ATP6V1FQ16864 119 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 RFX4Q33E94 735 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 ACSM3Q53FZ2 586 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 C1orf146Q5VVC0 180 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 FRMPD2BQ6IN97 320 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 NPSR1Q6W5P4 371 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 MBOAT1Q6ZNC8 495 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 LANCL3Q6ZV70 420 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 TMED4Q7Z7H5 227 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 PHF13Q86YI8 300 aaPredicted RBP2.89□□□□□ -1.95
NUP54-209ENST00000510569 TRAPPC5Q8IUR0 188 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 PRSS58Q8IYP2 241 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 LINC00518Q8N0U6 118 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 PDIK1LQ8N165 341 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 CENPSQ8N2Z9 138 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 C12orf29Q8N999 325 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 TMEM35BQ8NCS4 154 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 LFNGQ8NES3 379 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 OR4K2Q8NGD2 314 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 KIR2DL5BQ8NHK3 375 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 PIGXQ8TBF5 258 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 BAALCQ8WXS3 180 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 C18orf25Q96B23 403 aaPredicted RBP2.89□□□□□ -1.95
NUP54-209ENST00000510569 STARD4Q96DR4 205 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 WDR34Q96EX3 536 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 ITCHQ96J02 903 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 KCNA7Q96RP8 456 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 NIPSNAP3BQ9BS92 247 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 COPS4Q9BT78 406 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 ULBP1Q9BZM6 244 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 ACTR3CQ9C0K3 210 aaPredicted RBP2.89□□□□□ -1.95
NUP54-209ENST00000510569 NXF5Q9H1B4 397 aaKnown RBP2.89□□□□□ -1.95
NUP54-209ENST00000510569 SLC25A51Q9H1U9 297 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 NEUROG2Q9H2A3 272 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 PPA2Q9H2U2 334 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 ARMC7Q9H6L4 198 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 PATZ1Q9HBE1 687 aaKnown RBP2.89□□□□□ -1.95
NUP54-209ENST00000510569 ESM1Q9NQ30 184 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 FBXO8Q9NRD0 319 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 CTPS2Q9NRF8 586 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 SLC2A9Q9NRM0 540 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 DCAF13Q9NV06 445 aaKnown RBP2.89□□□□□ -1.95
NUP54-209ENST00000510569 PARVAQ9NVD7 372 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 FGFR1OP2Q9NVK5 253 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 ARMC1Q9NVT9 282 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 PAK1IP1Q9NWT1 392 aaPredicted RBP2.89□□□□□ -1.95
NUP54-209ENST00000510569 VAPAQ9P0L0 249 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 SLC2A6Q9UGQ3 507 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 PYCARDQ9ULZ3 195 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 YARS2Q9Y2Z4 477 aaKnown RBP2.89□□□□□ -1.95
NUP54-209ENST00000510569 MYO5AQ9Y4I1 1855 aaKnown RBP2.89□□□□□ -1.95
NUP54-209ENST00000510569 ALG6Q9Y672 507 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 LAMB2P55268 1798 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 BCORQ6W2J9 1755 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 DLEC1Q9Y238 1755 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 HIVEP2P31629 2446 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 BTAF1O14981 1849 aa2.89□□□□□ -1.95
NUP54-209ENST00000510569 ABCC12Q96J65 1359 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 DOT1LQ8TEK3 1739 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP2.88□□□□□ -1.95
NUP54-209ENST00000510569 A0A0D9SFI3 127 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 VPS37CA5D8V6 355 aaPredicted RBP2.88□□□□□ -1.95
NUP54-209ENST00000510569 ZNF233A6NK53 670 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 FAM74A7A6NL05 159 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 VSTM2BA6NLU5 285 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 FTCDNL1E5RQL4 147 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 H3BMH7 237 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 BET1O15155 118 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 TGOLN2O43493 480 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 EIF4E2O60573 245 aaKnown RBP2.88□□□□□ -1.95
NUP54-209ENST00000510569 HPGDSO60760 199 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 AP2A1O95782 977 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 TIMP1P01033 207 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 IGHG4P01861 327 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 CALB1P05937 261 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 RHOCP08134 193 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 H2AFZP0C0S5 128 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 LINC00614P0C842 121 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 C8orf88P0DMB2 117 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 HIST1H1CP16403 213 aaKnown RBP2.88□□□□□ -1.95
NUP54-209ENST00000510569 HMGB2P26583 209 aaKnown RBP2.88□□□□□ -1.95
NUP54-209ENST00000510569 SAA4P35542 130 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 OPRD1P41143 372 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 NBL1P41271 181 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 SLCO1A2P46721 670 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 GNPDA1P46926 289 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 CSNK1A1P48729 337 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 AP1S2P56377 157 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 CLDN6P56747 220 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 OR4D2P58180 307 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 RPS15AP62244 130 aaKnown RBP2.88□□□□□ -1.95
NUP54-209ENST00000510569 RPS4XP62701 263 aaKnown RBP2.88□□□□□ -1.95
NUP54-209ENST00000510569 TFAMQ00059 246 aaKnown RBP2.88□□□□□ -1.95
NUP54-209ENST00000510569 FLI1Q01543 452 aaPredicted RBP2.88□□□□□ -1.95
NUP54-209ENST00000510569 AESQ08117 197 aa2.88□□□□□ -1.95
NUP54-209ENST00000510569 IL18R1Q13478 541 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms