RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 PARP14Q460N5 1801 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 ARID2Q68CP9 1835 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 LRRK1Q38SD2 2015 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 NUP205Q92621 2012 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 GOLGA4Q13439 2230 aaKnown RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 IGHV3-16A0A0C4DH30 117 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 TRBV11-1A0A0K0K1C0 115 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 ATP6AP2A0A1C7CYW4 349 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 A0A1W2PP18 115 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 A0A1W2PQL4 384 aaPredicted RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 TMEM150BA6NC51 233 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 OR5H15A6NDH6 313 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 SDR42E2A6NKP2 422 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 A8MWP6 167 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 B4DXG7 233 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 D6RAR5 112 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 H0Y8G0 127 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 MKRN2OSH3BPM6 223 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 K7EQG2 157 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 HAS3O00219 553 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 COPEO14579 308 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 TP53I11O14683 189 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 SIVA1O15304 175 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 CYB5BO43169 146 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 SSNA1O43805 119 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 NME2P1O60361 137 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 SRPX2O60687 465 aaPredicted RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 HCN1O60741 890 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 BANF1O75531 89 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 ZMPSTE24O75844 475 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 GLCEO94923 617 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 CLDN9O95484 217 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 CLIC3O95833 236 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 RENP00797 406 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 SERPINA1P01009 418 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 IFNA21P01568 189 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 PMP2P02689 132 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 PCCBP05166 539 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 CD5P06127 495 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 CD2P06729 351 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 NBEAP1P0C6P0 100 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 OR8U8P0C7N1 319 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 METTL15P1P0C7V9 234 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 C8orf89P0DMQ9 161 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 HIST1H1BP16401 226 aaKnown RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF14P17017 642 aaPredicted RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 HLA-GP17693 338 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 PGAM1P18669 254 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 TSPAN8P19075 237 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 UCP1P25874 307 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 S100A2P29034 98 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 IL12BP29460 328 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 TIA1P31483 386 aaKnown RBP eCLIP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 CD80P33681 288 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 CA5AP35218 305 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 IFNGR2P38484 337 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 PMELP40967 661 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 MAGEA2P43356 314 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 OR3A1P47881 315 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 SRP9P49458 86 aaKnown RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 EVX1P49640 407 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 CSNK1EP49674 416 aaKnown RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 RGS6P49758 472 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 PPT1P50897 306 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 RPL14P50914 215 aaKnown RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 RAB5CP51148 216 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 IDH3GP51553 393 aaPredicted RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 EFNA3P52797 238 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 RAB25P57735 213 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 OR2B8PP59922 312 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 ERVS71-1P61550 626 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 NCS1P62166 190 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 SELENOTP62341 195 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 HERV-K104P63124 156 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 RPL19P84098 196 aaKnown RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 TLE4Q04727 773 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 PRKCDQ05655 676 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 RIPPLY1Q0D2K3 151 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 SLC10A7Q0GE19 358 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 SNTB2Q13425 540 aaKnown RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 RCAN2Q14206 197 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 PEA15Q15121 130 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 ATP6V1FQ16864 119 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 Q1RN00 199 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 ISXQ2M1V0 245 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 C5orf64Q2M2E5 130 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 GOLGA7BQ2TAP0 167 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF404Q494X3 552 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 MPPE1Q53F39 396 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 TEX44Q53QW1 395 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF789Q5FWF6 425 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 PYY3Q5JQD4 70 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 NHLRC3Q5JS37 347 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 GLRA4Q5JXX5 417 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 EOGTQ5NDL2 527 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 RBM48Q5RL73 367 aaKnown RBP1.66□□□□□ -2.14
HMGB1-208ENST00000490788 DNLZQ5SXM8 178 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 TPRG1LQ5T0D9 272 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 GPRC6AQ5T6X5 926 aa1.66□□□□□ -2.14
HMGB1-208ENST00000490788 PRAMEF8Q5VWM4 474 aa1.66□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms