RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 IDH3BO43837 385 aa12.98□□□□□ -0.33
USP48-210ENST00000489108 DIRAS1O95057 198 aa12.98□□□□□ -0.33
USP48-210ENST00000489108 ALDOBP05062 364 aa12.98□□□□□ -0.33
USP48-210ENST00000489108 SPARCP09486 303 aa12.98□□□□□ -0.33
USP48-210ENST00000489108 CCL3L1P16619 93 aa12.98□□□□□ -0.33
USP48-210ENST00000489108 CX3CR1P49238 355 aa12.98□□□□□ -0.33
USP48-210ENST00000489108 SLC25A1P53007 311 aa12.98□□□□□ -0.33
USP48-210ENST00000489108 GFOD2Q3B7J2 385 aa12.98□□□□□ -0.33
USP48-210ENST00000489108 FAM76BQ5HYJ3 339 aa12.98□□□□□ -0.33
USP48-210ENST00000489108 ZNF782Q6ZMW2 699 aaPredicted RBP12.98□□□□□ -0.33
USP48-210ENST00000489108 KCTD8Q6ZWB6 473 aa12.98□□□□□ -0.33
USP48-210ENST00000489108 CSNK2A3Q8NEV1 391 aa12.98□□□□□ -0.33
USP48-210ENST00000489108 OR4M1Q8NGD0 313 aa12.98□□□□□ -0.33
USP48-210ENST00000489108 OR5P3Q8WZ94 311 aa12.98□□□□□ -0.33
USP48-210ENST00000489108 DPF1Q92782 380 aa12.98□□□□□ -0.33
USP48-210ENST00000489108 MYDGFQ969H8 173 aa12.98□□□□□ -0.33
USP48-210ENST00000489108 MALSU1Q96EH3 234 aa12.98□□□□□ -0.33
USP48-210ENST00000489108 RNF170Q96K19 258 aa12.98□□□□□ -0.33
USP48-210ENST00000489108 FUZQ9BT04 418 aa12.98□□□□□ -0.33
USP48-210ENST00000489108 CHID1Q9BWS9 393 aa12.98□□□□□ -0.33
USP48-210ENST00000489108 YY1AP1Q9H869 796 aa12.98□□□□□ -0.33
USP48-210ENST00000489108 NDUFAF4Q9P032 175 aa12.98□□□□□ -0.33
USP48-210ENST00000489108 MPC1Q9Y5U8 109 aa12.98□□□□□ -0.33
USP48-210ENST00000489108 BBIP1A8MTZ0 92 aa12.97□□□□□ -0.33
USP48-210ENST00000489108 ZNF878C9JN71 531 aa12.97□□□□□ -0.33
USP48-210ENST00000489108 F2RL2O00254 374 aa12.97□□□□□ -0.33
USP48-210ENST00000489108 ZNF593O00488 134 aaPredicted RBP12.97□□□□□ -0.33
USP48-210ENST00000489108 CLIC3O95833 236 aa12.97□□□□□ -0.33
USP48-210ENST00000489108 CHRM2P08172 466 aa12.97□□□□□ -0.33
USP48-210ENST00000489108 JUNBP17275 347 aaPredicted RBP12.97□□□□□ -0.33
USP48-210ENST00000489108 RHCEP18577 417 aa12.97□□□□□ -0.33
USP48-210ENST00000489108 DCTDP32321 178 aa12.97□□□□□ -0.33
USP48-210ENST00000489108 RPL31P62899 125 aaKnown RBP12.97□□□□□ -0.33
USP48-210ENST00000489108 KLF10Q13118 480 aa12.97□□□□□ -0.33
USP48-210ENST00000489108 PRDX4Q13162 271 aa12.97□□□□□ -0.33
USP48-210ENST00000489108 FAM57BQ71RH2 274 aa12.97□□□□□ -0.33
USP48-210ENST00000489108 PRSS45Q7RTY3 260 aa12.97□□□□□ -0.33
USP48-210ENST00000489108 LINC00482Q8N8I6 264 aa12.97□□□□□ -0.33
USP48-210ENST00000489108 SDSLQ96GA7 329 aa12.97□□□□□ -0.33
USP48-210ENST00000489108 COMMD3-BMI1R4GMX3 469 aa12.97□□□□□ -0.33
USP48-210ENST00000489108 hCG_1809904A0A1W2PP81 198 aa12.96□□□□□ -0.33
USP48-210ENST00000489108 A0A1W2PPE2 198 aa12.96□□□□□ -0.33
USP48-210ENST00000489108 A0A1W2PPH5 198 aa12.96□□□□□ -0.33
USP48-210ENST00000489108 A0A1W2PR64 198 aa12.96□□□□□ -0.33
USP48-210ENST00000489108 A0A1W2PRV1 198 aa12.96□□□□□ -0.33
USP48-210ENST00000489108 ARG1P05089 322 aa12.96□□□□□ -0.33
USP48-210ENST00000489108 CCDC159P0C7I6 412 aa12.96□□□□□ -0.33
USP48-210ENST00000489108 CFL1P23528 166 aaKnown RBP12.96□□□□□ -0.33
USP48-210ENST00000489108 LIPEQ05469 1076 aa12.96□□□□□ -0.33
USP48-210ENST00000489108 DCTN2Q13561 401 aaKnown RBP12.96□□□□□ -0.33
USP48-210ENST00000489108 SLC15A3Q8IY34 581 aa12.96□□□□□ -0.33
USP48-210ENST00000489108 ZNF511Q8NB15 262 aa12.96□□□□□ -0.33
USP48-210ENST00000489108 OR2T4Q8NH00 348 aa12.96□□□□□ -0.33
USP48-210ENST00000489108 OR2T27Q8NH04 317 aa12.96□□□□□ -0.33
USP48-210ENST00000489108 PIGCQ92535 297 aa12.96□□□□□ -0.33
USP48-210ENST00000489108 FOXRED1Q96CU9 486 aaPredicted RBP12.96□□□□□ -0.33
USP48-210ENST00000489108 GPR61Q9BZJ8 451 aa12.96□□□□□ -0.33
USP48-210ENST00000489108 BRD7Q9NPI1 651 aa12.96□□□□□ -0.33
USP48-210ENST00000489108 USE1Q9NZ43 259 aa12.96□□□□□ -0.33
USP48-210ENST00000489108 TBL2Q9Y4P3 447 aaKnown RBP12.96□□□□□ -0.33
USP48-210ENST00000489108 LRP12Q9Y561 859 aa12.96□□□□□ -0.33
USP48-210ENST00000489108 DHRS12A0PJE2 317 aa12.95□□□□□ -0.34
USP48-210ENST00000489108 ACKR3P25106 362 aa12.95□□□□□ -0.34
USP48-210ENST00000489108 LMO1P25800 156 aa12.95□□□□□ -0.34
USP48-210ENST00000489108 SLC15A1P46059 708 aa12.95□□□□□ -0.34
USP48-210ENST00000489108 ENTPD1P49961 510 aa12.95□□□□□ -0.34
USP48-210ENST00000489108 ZNF121P58317 390 aaPredicted RBP12.95□□□□□ -0.34
USP48-210ENST00000489108 GRB2P62993 217 aaKnown RBP12.95□□□□□ -0.34
USP48-210ENST00000489108 ZNF273Q14593 569 aa12.95□□□□□ -0.34
USP48-210ENST00000489108 C10orf99Q6UWK7 81 aa12.95□□□□□ -0.34
USP48-210ENST00000489108 THAP5Q7Z6K1 395 aa12.95□□□□□ -0.34
USP48-210ENST00000489108 MRPL41Q8IXM3 137 aaKnown RBP12.95□□□□□ -0.34
USP48-210ENST00000489108 TIGD4Q8IY51 512 aa12.95□□□□□ -0.34
USP48-210ENST00000489108 LINC00471Q8N535 108 aa12.95□□□□□ -0.34
USP48-210ENST00000489108 CD177Q8N6Q3 437 aa12.95□□□□□ -0.34
USP48-210ENST00000489108 HPSE2Q8WWQ2 592 aa12.95□□□□□ -0.34
USP48-210ENST00000489108 C7orf34Q96L11 122 aa12.95□□□□□ -0.34
USP48-210ENST00000489108 DHRS1Q96LJ7 313 aa12.95□□□□□ -0.34
USP48-210ENST00000489108 OR10A2Q9H208 303 aa12.95□□□□□ -0.34
USP48-210ENST00000489108 GAR1Q9NY12 217 aaKnown RBP12.95□□□□□ -0.34
USP48-210ENST00000489108 DNAJC27Q9NZQ0 273 aa12.95□□□□□ -0.34
USP48-210ENST00000489108 RFPL4AA6NLU0 287 aa12.94□□□□□ -0.34
USP48-210ENST00000489108 ODF3BA8MYP8 253 aa12.94□□□□□ -0.34
USP48-210ENST00000489108 RFPL4AL1F8VTS6 287 aa12.94□□□□□ -0.34
USP48-210ENST00000489108 CST4P01036 141 aa12.94□□□□□ -0.34
USP48-210ENST00000489108 NCK1P16333 377 aa12.94□□□□□ -0.34
USP48-210ENST00000489108 HSD11B1P28845 292 aa12.94□□□□□ -0.34
USP48-210ENST00000489108 FMO3P31513 532 aa12.94□□□□□ -0.34
USP48-210ENST00000489108 GPM6AP51674 278 aa12.94□□□□□ -0.34
USP48-210ENST00000489108 DYNLT3P51808 116 aa12.94□□□□□ -0.34
USP48-210ENST00000489108 MAPRE2Q15555 327 aa12.94□□□□□ -0.34
USP48-210ENST00000489108 SNCBQ16143 134 aa12.94□□□□□ -0.34
USP48-210ENST00000489108 KLHL22Q53GT1 634 aa12.94□□□□□ -0.34
USP48-210ENST00000489108 KHDC1LQ5JSQ8 128 aa12.94□□□□□ -0.34
USP48-210ENST00000489108 TEX30Q5JUR7 227 aa12.94□□□□□ -0.34
USP48-210ENST00000489108 NKAPLQ5M9Q1 402 aa12.94□□□□□ -0.34
USP48-210ENST00000489108 CASC10Q5T4H9 136 aa12.94□□□□□ -0.34
USP48-210ENST00000489108 FTMTQ8N4E7 242 aa12.94□□□□□ -0.34
USP48-210ENST00000489108 OR52H1Q8NGJ2 320 aa12.94□□□□□ -0.34
USP48-210ENST00000489108 FAM162AQ96A26 154 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms