RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-209ENST00000472044 CENPXA8MT69 81 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 C16orf90A8MZG2 172 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 SLC35G6P0C7Q6 338 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 RNASE2P10153 161 aaKnown RBP1.98□□□□□ -2.09
PTCD3-209ENST00000472044 IVDP26440 423 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 IL3RAP26951 378 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 ARL2P36404 184 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 IDH2P48735 452 aaKnown RBP1.98□□□□□ -2.09
PTCD3-209ENST00000472044 BCAP31P51572 246 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 CMC4P56277 68 aaPredicted RBP1.98□□□□□ -2.09
PTCD3-209ENST00000472044 TAS2R43P59537 309 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 SLC35A1P78382 337 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 ELF3P78545 371 aaPredicted RBP1.98□□□□□ -2.09
PTCD3-209ENST00000472044 C2orf54Q08AI8 447 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 DMC1Q14565 340 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 NKAIN1Q4KMZ8 207 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 KLHL12Q53G59 568 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 MLIPQ5VWP3 458 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 C16orf47Q6ZP98 133 aaPredicted RBP1.98□□□□□ -2.09
PTCD3-209ENST00000472044 ORMDL3Q8N138 153 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 RNF10Q8N5U6 811 aaKnown RBP1.98□□□□□ -2.09
PTCD3-209ENST00000472044 LINC00469Q8N7U9 141 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 OR2Z1Q8NG97 314 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 OR4M2Q8NGB6 313 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 OR5M1Q8NGP8 315 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 OR6K6Q8NGW6 343 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 OR52N1Q8NH53 320 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 SFXN5Q8TD22 340 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 TCP10LQ8TDR4 215 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 TMEM234Q8WY98 164 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 OR8D1Q8WZ84 308 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 ALS2CR12Q96Q35 445 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 C1orf50Q9BV19 199 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 ARV1Q9H2C2 271 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 KIR3DX1Q9H7L2 352 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 ZMAT5Q9UDW3 170 aaKnown RBP1.98□□□□□ -2.09
PTCD3-209ENST00000472044 NDRG2Q9UN36 371 aaKnown RBP1.98□□□□□ -2.09
PTCD3-209ENST00000472044 KIF27Q86VH2 1401 aa1.98□□□□□ -2.09
PTCD3-209ENST00000472044 IGHV6-1A0A0B4J1U7 121 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 IGHV2OR16-5A0A0B4J2B6 119 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 A0A1W2PPV4 95 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 A8MWL6 223 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 DFFAO00273 331 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 GCGP01275 180 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 MAS1P04201 325 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 CRYGCP07315 174 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 MMP7P09237 267 aaPredicted RBP1.97□□□□□ -2.09
PTCD3-209ENST00000472044 GZMAP12544 262 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 PRSS3P35030 304 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 PPP1CAP62136 330 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 PSMC5P62195 406 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 PAFAH1B2P68402 229 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 ST3GAL4Q11206 333 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 MED27Q6P2C8 311 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 MORN3Q6PF18 240 aaPredicted RBP1.97□□□□□ -2.09
PTCD3-209ENST00000472044 CASP12Q6UXS9 341 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 SLC7A5P1Q8MH63 180 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 STK40Q8N2I9 435 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 FBXO36Q8NEA4 188 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 SLC26A10Q8NG04 563 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 GPR82Q96P67 336 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 BCL7BQ9BQE9 202 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 RHOXF2Q9BQY4 288 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 FBXO44Q9H4M3 255 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 LINC00574Q9H8X3 128 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 TAS2R5Q9NYW4 299 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 SHROOM3Q8TF72 1996 aa1.97□□□□□ -2.09
PTCD3-209ENST00000472044 AQRO60306 1485 aaKnown RBP eCLIP1.96□□□□□ -2.11e-8■■■■■ 29.2
PTCD3-209ENST00000472044 A0A0J9YYE9 177 aa1.96□□□□□ -2.1
PTCD3-209ENST00000472044 CEACAM18A8MTB9 384 aa1.96□□□□□ -2.1
PTCD3-209ENST00000472044 TRAPPC6AO75865 159 aa1.96□□□□□ -2.1
PTCD3-209ENST00000472044 OTCP00480 354 aa1.96□□□□□ -2.1
PTCD3-209ENST00000472044 TRBC1P01850 177 aa1.96□□□□□ -2.1
PTCD3-209ENST00000472044 GDI2P50395 445 aaKnown RBP1.96□□□□□ -2.1
PTCD3-209ENST00000472044 MTPNP58546 118 aa1.96□□□□□ -2.1
PTCD3-209ENST00000472044 BTN1A1Q13410 526 aa1.96□□□□□ -2.1
PTCD3-209ENST00000472044 SP6Q3SY56 376 aa1.96□□□□□ -2.1
PTCD3-209ENST00000472044 FBXL19-AS1Q494R0 122 aa1.96□□□□□ -2.1
PTCD3-209ENST00000472044 CPTPQ5TA50 214 aa1.96□□□□□ -2.1
PTCD3-209ENST00000472044 ASCL4Q6XD76 172 aa1.96□□□□□ -2.1
PTCD3-209ENST00000472044 NT5DC3Q86UY8 548 aa1.96□□□□□ -2.1
PTCD3-209ENST00000472044 ZNF321PQ8N8H1 164 aa1.96□□□□□ -2.1
PTCD3-209ENST00000472044 TMEM104Q8NE00 496 aa1.96□□□□□ -2.1
PTCD3-209ENST00000472044 ZFAND1Q8TCF1 268 aa1.96□□□□□ -2.1
PTCD3-209ENST00000472044 TFGQ92734 400 aaPredicted RBP1.96□□□□□ -2.1
PTCD3-209ENST00000472044 GABRG3Q99928 467 aa1.96□□□□□ -2.1
PTCD3-209ENST00000472044 MARVELD1Q9BSK0 173 aa1.96□□□□□ -2.1
PTCD3-209ENST00000472044 CHTOPQ9Y3Y2 248 aaKnown RBP1.96□□□□□ -2.1
PTCD3-209ENST00000472044 KLF12Q9Y4X4 402 aa1.96□□□□□ -2.1
PTCD3-209ENST00000472044 NPHP4O75161 1426 aaPredicted RBP1.96□□□□□ -2.1
PTCD3-209ENST00000472044 SEC16AO15027 2179 aa1.96□□□□□ -2.1
PTCD3-209ENST00000472044 SHANK1Q9Y566 2161 aa1.96□□□□□ -2.1
PTCD3-209ENST00000472044 DYSFO75923 2080 aa1.95□□□□□ -2.1
PTCD3-209ENST00000472044 TRAV8-4A0A0B4J246 113 aa1.95□□□□□ -2.1
PTCD3-209ENST00000472044 PRAMEF26H0Y7S4 382 aa1.95□□□□□ -2.1
PTCD3-209ENST00000472044 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.95□□□□□ -2.1
PTCD3-209ENST00000472044 MFNGO00587 321 aa1.95□□□□□ -2.1
PTCD3-209ENST00000472044 SMC2O95347 1197 aa1.95□□□□□ -2.1
PTCD3-209ENST00000472044 PLEKHA8P1O95397 391 aa1.95□□□□□ -2.1
PTCD3-209ENST00000472044 ETHE1O95571 254 aa1.95□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms