RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 DCAF16Q9NXF7 216 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 ZNF586Q9NXT0 402 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 IGLV3-25P01717 112 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 ZNF774Q6NX45 483 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 C16orf47Q6ZP98 133 aaPredicted RBP13.8□□□□□ -0.2
PTPRF-206ENST00000429895 PTOV1Q86YD1 416 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 OR4C16Q8NGL9 310 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 OR1L4Q8NGR5 311 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 FBP1P09467 338 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 SULT1A3P0DMM9 295 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 SULT1A4P0DMN0 295 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 HES3Q5TGS1 186 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 NHLRC2Q8NBF2 726 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 RD3LP0DJH9 198 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 GNG3P63215 75 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 TGIF2LXQ8IUE1 241 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 ZDHHC11Q9H8X9 412 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 POMT1Q9Y6A1 747 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 TAGLNQ01995 201 aaKnown RBP13.79□□□□□ -0.2
PTPRF-206ENST00000429895 RNPS1Q15287 305 aaKnown RBP13.79□□□□□ -0.2
PTPRF-206ENST00000429895 ZNF425Q6IV72 752 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 LRRC29Q8WV35 223 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 NIT2Q9NQR4 276 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 PHIPQ8WWQ0 1821 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 C1QBP02746 253 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 NME1P15531 152 aaKnown RBP13.79□□□□□ -0.2
PTPRF-206ENST00000429895 CD1EP15812 388 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 SUMO1P63165 101 aaKnown RBP13.79□□□□□ -0.2
PTPRF-206ENST00000429895 FAM3AP98173 230 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 B4GALNT1Q00973 533 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 DYNC2LI1Q8TCX1 351 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 TMEM56Q96MV1 263 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 DOK5Q9P104 306 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 TCRBV5S2A0A599 114 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 SLC25A5P05141 298 aaKnown RBP13.79□□□□□ -0.2
PTPRF-206ENST00000429895 ACER2Q5QJU3 275 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 LHX8Q68G74 356 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 DGAT2L6Q6ZPD8 337 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 HSD17B10Q99714 261 aaKnown RBP13.79□□□□□ -0.2
PTPRF-206ENST00000429895 GON4LQ3T8J9 2241 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 HSPB2A8KAH6 182 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 G0S2P27469 103 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 HSPB2Q16082 182 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 Q3ZCU0 254 aa13.79□□□□□ -0.2
PTPRF-206ENST00000429895 RER1O15258 196 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 SPINK4O60575 86 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 CD37P11049 281 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 TFF2Q03403 129 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 ZNF788Q6ZQV5 615 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 OR4F17Q8NGA8 305 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 MRGPREQ86SM8 312 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 TP53I13Q8NBR0 393 aaPredicted RBP13.78□□□□□ -0.2
PTPRF-206ENST00000429895 TM4SF19Q96DZ7 209 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 LSM2Q9Y333 95 aaKnown RBP13.78□□□□□ -0.2
PTPRF-206ENST00000429895 ICMTO60725 284 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 SCGB1C2P0DMR2 95 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 FUT3P21217 361 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 FA2HQ7L5A8 372 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 ABI3BPQ7Z7G0 1075 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 MTCH2Q9Y6C9 303 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 TRBV5-4A0A0C4DH59 114 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 ADRB1P08588 477 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 SPINK14Q6IE38 97 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 CADM3Q8N126 398 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 ZNF485Q8NCK3 441 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 OR10D3Q8NH80 312 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 PPP1R1CQ8WVI7 109 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 CHRDL1Q9BU40 450 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 KLK8O60259 260 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 SMIM18P0DKX4 95 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 PRSS12P56730 875 aa13.78□□□□□ -0.2
PTPRF-206ENST00000429895 A0A1B0GTL3 188 aa13.77□□□□□ -0.2
PTPRF-206ENST00000429895 PATE4P0C8F1 98 aa13.77□□□□□ -0.2
PTPRF-206ENST00000429895 TMIGD3P0DMS9 266 aaPredicted RBP13.77□□□□□ -0.2
PTPRF-206ENST00000429895 CDC34P49427 236 aaPredicted RBP13.77□□□□□ -0.2
PTPRF-206ENST00000429895 BTNL3Q6UXE8 466 aa13.77□□□□□ -0.2
PTPRF-206ENST00000429895 TMEM108Q6UXF1 575 aa13.77□□□□□ -0.2
PTPRF-206ENST00000429895 OTOSQ8NHW6 89 aa13.77□□□□□ -0.2
PTPRF-206ENST00000429895 UCK1Q9HA47 277 aa13.77□□□□□ -0.2
PTPRF-206ENST00000429895 YBX2Q9Y2T7 364 aaKnown RBP13.77□□□□□ -0.2
PTPRF-206ENST00000429895 CELA2BP08218 269 aaPredicted RBP13.77□□□□□ -0.2
PTPRF-206ENST00000429895 SOX8P57073 446 aa13.77□□□□□ -0.2
PTPRF-206ENST00000429895 ZNF260Q3ZCT1 412 aa13.77□□□□□ -0.2
PTPRF-206ENST00000429895 PABPC1L2AQ5JQF8 200 aa13.77□□□□□ -0.2
PTPRF-206ENST00000429895 PRSS41Q7RTY9 318 aa13.77□□□□□ -0.2
PTPRF-206ENST00000429895 C20orf141Q9NUB4 165 aa13.77□□□□□ -0.2
PTPRF-206ENST00000429895 SCO1O75880 301 aa13.77□□□□□ -0.21
PTPRF-206ENST00000429895 EPHA2P29317 976 aa13.77□□□□□ -0.21
PTPRF-206ENST00000429895 IL11RAQ14626 422 aa13.77□□□□□ -0.21
PTPRF-206ENST00000429895 C3AR1Q16581 482 aa13.77□□□□□ -0.21
PTPRF-206ENST00000429895 DPF1Q92782 380 aa13.77□□□□□ -0.21
PTPRF-206ENST00000429895 LURAP1Q96LR2 239 aa13.77□□□□□ -0.21
PTPRF-206ENST00000429895 RHNO1Q9BSD3 238 aa13.77□□□□□ -0.21
PTPRF-206ENST00000429895 GPR87Q9BY21 358 aa13.77□□□□□ -0.21
PTPRF-206ENST00000429895 ERRFI1Q9UJM3 462 aaPredicted RBP13.77□□□□□ -0.21
PTPRF-206ENST00000429895 NRXN3Q9Y4C0 1643 aa13.77□□□□□ -0.21
PTPRF-206ENST00000429895 GYPAP02724 150 aa13.77□□□□□ -0.21
PTPRF-206ENST00000429895 HTN1P15515 57 aa13.77□□□□□ -0.21
PTPRF-206ENST00000429895 LPAR6P43657 344 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms