RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 CAPZA1P52907 286 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 SSBP1Q04837 148 aaKnown RBP7.33□□□□□ -1.24
CD44-208ENST00000428726 PPP1R1AQ13522 171 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 HNF4GQ14541 408 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 RSPO1Q2MKA7 263 aaPredicted RBP7.33□□□□□ -1.24
CD44-208ENST00000428726 RNASE10Q5GAN6 216 aaKnown RBP7.33□□□□□ -1.24
CD44-208ENST00000428726 TMEM244Q5VVB8 128 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 GSG1LQ6UXU4 331 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 ZNF813Q6ZN06 617 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.33□□□□□ -1.24
CD44-208ENST00000428726 OR5AS1Q8N127 324 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 PRR18Q8N4B5 295 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 OR9K2Q8NGE7 335 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 OR5D14Q8NGL3 314 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 ZNF488Q96MN9 340 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 IER2Q9BTL4 223 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 FAAP24Q9BTP7 215 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 SLC26A1Q9H2B4 701 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 CHMP1AQ9HD42 196 aaPredicted RBP7.33□□□□□ -1.24
CD44-208ENST00000428726 OR2S2Q9NQN1 319 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 TAS2R3Q9NYW6 316 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 NUP50Q9UKX7 468 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 ARFGEF3Q5TH69 2177 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 AGPAT2O15120 278 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 OR4E1P0C645 316 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 AKAIN1P0CW23 69 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 CD37P11049 281 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 PLGLB1Q02325 96 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 PIGYQ3MUY2 71 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 NHLRC3Q5JS37 347 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 OPN5Q6U736 354 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 AAED1Q7RTV5 226 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 ADGRE4PQ86SQ3 457 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 ZNF546Q86UE3 836 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 ZFP82Q8N141 532 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 SGCZQ96LD1 299 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 OXGR1Q96P68 337 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 HS3ST6Q96QI5 342 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 ARPC5LQ9BPX5 153 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 NPDC1Q9NQX5 325 aaPredicted RBP7.33□□□□□ -1.24
CD44-208ENST00000428726 OPN4Q9UHM6 478 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 PFDN2Q9UHV9 154 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 SNRPGP15A8MWD9 76 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 F5H5P2 479 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 M0R135 149 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 UBCP0CG48 685 aaKnown RBP7.33□□□□□ -1.24
CD44-208ENST00000428726 RPA2P15927 270 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 MMP16P51512 607 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 MTCP1P56278 107 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 TMEM50BP56557 158 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 RBMS2Q15434 407 aaKnown RBP7.33□□□□□ -1.24
CD44-208ENST00000428726 ATPAF1Q5TC12 328 aaPredicted RBP7.33□□□□□ -1.24
CD44-208ENST00000428726 TUSC5Q8IXB3 177 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 ZIC4Q8N9L1 334 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 CLEC1AQ8NC01 280 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 STEAP2Q8NFT2 490 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 PSMF1Q92530 271 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 ZNF799Q96GE5 643 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 FZR1Q9UM11 496 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 TRIM77I1YAP6 450 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 DHHO43323 396 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 TNFSF12O43508 249 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 CER1O95813 267 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 HOXA6P31267 233 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 AKR1C3P42330 323 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 CYB561P49447 251 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 CCL11P51671 97 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 ATP1B3P54709 279 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 KISS1Q15726 138 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 THEM4Q5T1C6 240 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 ZNF626Q68DY1 528 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 UBALD2Q8IYN6 164 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 SPICQ8N5J4 248 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 NKAIN3Q8N8D7 197 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 ADPRHL1Q8NDY3 354 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 OR2AK2Q8NG84 335 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 OR5M9Q8NGP3 310 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 OR13C8Q8NGS7 320 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 C2CD4CQ8TF44 421 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 FOXRED1Q96CU9 486 aaPredicted RBP7.32□□□□□ -1.24
CD44-208ENST00000428726 REEP6Q96HR9 211 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 S100A13Q99584 98 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 SMIM3Q9BZL3 60 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 ZNF503-AS2A6NEH8 195 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 SULT1C2O00338 296 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 YKT6O15498 198 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 NKX2-8O15522 239 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 SCGB1D2O95969 90 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 NGFP01138 241 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 SFTPBP07988 381 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 FGF5P12034 268 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 ACTBP60709 375 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 ACTG1P63261 375 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 IL13RA1P78552 427 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 TAGLNQ01995 201 aaKnown RBP7.32□□□□□ -1.24
CD44-208ENST00000428726 DHRS2Q13268 280 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 STK11Q15831 433 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 C6orf15Q6UXA7 325 aaPredicted RBP7.32□□□□□ -1.24
CD44-208ENST00000428726 TMEM185AQ8NFB2 350 aa7.32□□□□□ -1.24
CD44-208ENST00000428726 OR4K15Q8NH41 348 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms