RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 PPBPP02775 128 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 IFNA16P05015 189 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 CD5P06127 495 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 PRSS1P07477 247 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 SNRPCP09234 159 aaKnown RBP3.27□□□□□ -1.89
HMGB1-204ENST00000399489 DAOP14920 347 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 KCNE1P15382 129 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 CELP19835 753 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 RAB5AP20339 215 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 PVALBP20472 110 aaPredicted RBP3.27□□□□□ -1.89
HMGB1-204ENST00000399489 HTR1DP28221 377 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 NUDT1P36639 197 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 SRP9P49458 86 aaKnown RBP3.27□□□□□ -1.89
HMGB1-204ENST00000399489 RANP62826 216 aaKnown RBP3.27□□□□□ -1.89
HMGB1-204ENST00000399489 RBX1P62877 108 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 ZNF92Q03936 586 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 BCL2L1Q07817 233 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 SLC10A7Q0GE19 358 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 POU6F1Q14863 301 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 LTB4RQ15722 352 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 SLC1A5Q15758 541 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 SAXO2Q658L1 398 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 OLFML2AQ68BL7 652 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 ZFP1Q6P2D0 407 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 C12orf54Q6X4T0 127 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 CYHR1Q6ZMK1 362 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 GDPD3Q7L5L3 318 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 TMEM135Q86UB9 458 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 PNKDQ8N490 385 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 FTMTQ8N4E7 242 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 SPICQ8N5J4 248 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 TMEM178AQ8NBL3 297 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 OR10W1Q8NGF6 305 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 OR10G7Q8NGN6 311 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 OR2A1Q8NGT9 310 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 FLVCR1-AS1Q8TAF5 88 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 PIFOQ8TCI5 191 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 MED8Q96G25 268 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 FAM210BQ96KR6 192 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 TMEM56Q96MV1 263 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 ZIM3Q96PE6 472 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 OR2V2Q96R30 315 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 GABRG3Q99928 467 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 TMED9Q9BVK6 235 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 OSBPL11Q9BXB4 747 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 KLHL21Q9UJP4 597 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 ASF1AQ9Y294 204 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 XIRP1Q702N8 1843 aaKnown RBP3.27□□□□□ -1.89
HMGB1-204ENST00000399489 RTEL1-TNFRSF6BF6WH68 1400 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 NRCAMQ92823 1304 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 LRRC9Q6ZRR7 1453 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 PRDM15P57071 1507 aaPredicted RBP3.27□□□□□ -1.89
HMGB1-204ENST00000399489 A6NDN8 102 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 RFPL4AA6NLU0 287 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 C15orf61A6NNL5 157 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 RFPL4AL1F8VTS6 287 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 K7EQG2 157 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 M0R1B8 84 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 CXCR6O00574 342 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 ARPC5O15511 151 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 CHP2O43745 196 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 SYNGR1O43759 233 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 KLRC4O43908 158 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 PTTG1O95997 202 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 OR5AL1P0C617 328 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 ADRB3P13945 408 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 GTF2F2P13984 249 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 USF1P22415 310 aaPredicted RBP3.27□□□□□ -1.89
HMGB1-204ENST00000399489 PSMA1P25786 263 aaKnown RBP3.27□□□□□ -1.89
HMGB1-204ENST00000399489 ELK4P28324 431 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 HRH1P35367 487 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 RPL29P47914 159 aaKnown RBP3.27□□□□□ -1.89
HMGB1-204ENST00000399489 ACVR1Q04771 509 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 CCL14Q16627 93 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 KLF17Q5JT82 389 aaPredicted RBP3.27□□□□□ -1.89
HMGB1-204ENST00000399489 CYB5R2Q6BCY4 276 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 UFSP1Q6NVU6 142 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 Q6ZN92 141 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 TMEM179Q6ZVK1 233 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 TRPT1Q86TN4 253 aaKnown RBP3.27□□□□□ -1.89
HMGB1-204ENST00000399489 DAW1Q8N136 415 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 LGI3Q8N145 548 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 STX19Q8N4C7 294 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 SECTM1Q8WVN6 248 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 FGF14Q92915 247 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 TLCD1Q96CP7 247 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 RCN3Q96D15 328 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 PHB2Q99623 299 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 C20orf144Q9BQM9 153 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 KIFC1Q9BW19 673 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 YTHDF1Q9BYJ9 559 aaKnown RBP3.27□□□□□ -1.89
HMGB1-204ENST00000399489 TMEM27Q9HBJ8 222 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.27□□□□□ -1.89
HMGB1-204ENST00000399489 TMEM181Q9P2C4 612 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 MGAT4AQ9UM21 535 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 NUBP2Q9Y5Y2 271 aa3.27□□□□□ -1.89
HMGB1-204ENST00000399489 PLEKHH2Q8IVE3 1493 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 RTL9Q8NET4 1388 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 PPIP5K1Q6PFW1 1433 aa3.26□□□□□ -1.89
HMGB1-204ENST00000399489 A0A0G2JLM5 398 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms