RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 TMEM186Q96B77 213 aa18.2■□□□□ 0.5
CLN3-207ENST00000395653 TMEM246Q9BRR3 403 aa18.2■□□□□ 0.5
CLN3-207ENST00000395653 PLEKHA1Q9HB21 404 aa18.2■□□□□ 0.5
CLN3-207ENST00000395653 LPAR2Q9HBW0 351 aa18.2■□□□□ 0.5
CLN3-207ENST00000395653 PLCXD1Q9NUJ7 323 aa18.2■□□□□ 0.5
CLN3-207ENST00000395653 TRAV20A0A0B4J274 112 aa18.19■□□□□ 0.5
CLN3-207ENST00000395653 CDIPTO14735 213 aa18.19■□□□□ 0.5
CLN3-207ENST00000395653 HOXB4P17483 251 aaPredicted RBP18.19■□□□□ 0.5
CLN3-207ENST00000395653 PCMT1P22061 227 aa18.19■□□□□ 0.5
CLN3-207ENST00000395653 ALKBH1Q13686 389 aaKnown RBP18.19■□□□□ 0.5
CLN3-207ENST00000395653 KCTD8Q6ZWB6 473 aa18.19■□□□□ 0.5
CLN3-207ENST00000395653 MOB3CQ70IA8 216 aa18.19■□□□□ 0.5
CLN3-207ENST00000395653 GGHQ92820 318 aa18.19■□□□□ 0.5
CLN3-207ENST00000395653 C10orf35Q96D05 121 aa18.19■□□□□ 0.5
CLN3-207ENST00000395653 TMEM80Q96HE8 168 aa18.19■□□□□ 0.5
CLN3-207ENST00000395653 TRIM36Q9NQ86 728 aa18.19■□□□□ 0.5
CLN3-207ENST00000395653 CNOT2Q9NZN8 540 aaKnown RBP18.19■□□□□ 0.5
CLN3-207ENST00000395653 CAB39Q9Y376 341 aaPredicted RBP18.19■□□□□ 0.5
CLN3-207ENST00000395653 EXOSC1Q9Y3B2 195 aaKnown RBP18.19■□□□□ 0.5
CLN3-207ENST00000395653 EFCAB10A6NFE3 127 aa18.18■□□□□ 0.5
CLN3-207ENST00000395653 ZNF732B4DXR9 585 aa18.18■□□□□ 0.5
CLN3-207ENST00000395653 LGALS8O00214 317 aa18.18■□□□□ 0.5
CLN3-207ENST00000395653 PLPP2O43688 288 aa18.18■□□□□ 0.5
CLN3-207ENST00000395653 MYL12AP19105 171 aa18.18■□□□□ 0.5
CLN3-207ENST00000395653 ETV1P50549 477 aa18.18■□□□□ 0.5
CLN3-207ENST00000395653 GPM6AP51674 278 aa18.18■□□□□ 0.5
CLN3-207ENST00000395653 MED21Q13503 144 aa18.18■□□□□ 0.5
CLN3-207ENST00000395653 KCNJ8Q15842 424 aa18.18■□□□□ 0.5
CLN3-207ENST00000395653 DCDC5Q6ZRR9 648 aa18.18■□□□□ 0.5
CLN3-207ENST00000395653 SCCPDHQ8NBX0 429 aa18.18■□□□□ 0.5
CLN3-207ENST00000395653 LRRC29Q8WV35 223 aa18.18■□□□□ 0.5
CLN3-207ENST00000395653 RPL3LQ92901 407 aaKnown RBP18.18■□□□□ 0.5
CLN3-207ENST00000395653 MIOXQ9UGB7 285 aa18.18■□□□□ 0.5
CLN3-207ENST00000395653 CDC42EP3Q9UKI2 254 aa18.18■□□□□ 0.5
CLN3-207ENST00000395653 OOEPA6NGQ2 149 aa18.17■□□□□ 0.5
CLN3-207ENST00000395653 OR4C45A6NMZ5 311 aa18.17■□□□□ 0.5
CLN3-207ENST00000395653 RPSAP08865 295 aaKnown RBP18.17■□□□□ 0.5
CLN3-207ENST00000395653 WNT2P09544 360 aa18.17■□□□□ 0.5
CLN3-207ENST00000395653 RPS2P15880 293 aaKnown RBP18.17■□□□□ 0.5
CLN3-207ENST00000395653 CD80P33681 288 aa18.17■□□□□ 0.5
CLN3-207ENST00000395653 TGM4P49221 684 aa18.17■□□□□ 0.5
CLN3-207ENST00000395653 GBX2P52951 348 aaPredicted RBP18.17■□□□□ 0.5
CLN3-207ENST00000395653 HOXA4Q00056 320 aaPredicted RBP18.17■□□□□ 0.5
CLN3-207ENST00000395653 TMPRSS11AQ6ZMR5 421 aa18.17■□□□□ 0.5
CLN3-207ENST00000395653 RDH10Q8IZV5 341 aa18.17■□□□□ 0.5
CLN3-207ENST00000395653 BOLLQ8N9W6 283 aaKnown RBP18.17■□□□□ 0.5
CLN3-207ENST00000395653 C19orf18Q8NEA5 215 aa18.17■□□□□ 0.5
CLN3-207ENST00000395653 OR10Z1Q8NGY1 313 aa18.17■□□□□ 0.5
CLN3-207ENST00000395653 OR51I2Q9H344 312 aa18.17■□□□□ 0.5
CLN3-207ENST00000395653 METTL17Q9H7H0 456 aaPredicted RBP18.17■□□□□ 0.5
CLN3-207ENST00000395653 GPR173Q9NS66 373 aa18.17■□□□□ 0.5
CLN3-207ENST00000395653 HIF1ANQ9NWT6 349 aa18.17■□□□□ 0.5
CLN3-207ENST00000395653 LPAR3Q9UBY5 353 aa18.17■□□□□ 0.5
CLN3-207ENST00000395653 PSORS1C1Q9UIG5 152 aa18.17■□□□□ 0.5
CLN3-207ENST00000395653 NAV3Q8IVL0 2385 aa18.17■□□□□ 0.5
CLN3-207ENST00000395653 TRAV38-1A0A0B4J264 116 aa18.16■□□□□ 0.5
CLN3-207ENST00000395653 ANKRD61A6NGH8 418 aa18.16■□□□□ 0.5
CLN3-207ENST00000395653 A6NIN4 97 aa18.16■□□□□ 0.5
CLN3-207ENST00000395653 A8MXK9 166 aa18.16■□□□□ 0.5
CLN3-207ENST00000395653 SRRM5B3KS81 715 aa18.16■□□□□ 0.5
CLN3-207ENST00000395653 H3BSH0 61 aa18.16■□□□□ 0.5
CLN3-207ENST00000395653 XPNPEP2O43895 674 aa18.16■□□□□ 0.5
CLN3-207ENST00000395653 FOXH1O75593 365 aa18.16■□□□□ 0.5
CLN3-207ENST00000395653 CCDC159P0C7I6 412 aa18.16■□□□□ 0.5
CLN3-207ENST00000395653 EGR1P18146 543 aa18.16■□□□□ 0.5
CLN3-207ENST00000395653 HSPA13P48723 471 aa18.16■□□□□ 0.5
CLN3-207ENST00000395653 ST3GAL4Q11206 333 aa18.16■□□□□ 0.5
CLN3-207ENST00000395653 TEX36Q5VZQ5 186 aa18.16■□□□□ 0.5
CLN3-207ENST00000395653 SFRP4Q6FHJ7 346 aaPredicted RBP18.16■□□□□ 0.5
CLN3-207ENST00000395653 IZUMO2Q6UXV1 221 aa18.16■□□□□ 0.5
CLN3-207ENST00000395653 ZNF676Q8N7Q3 588 aa18.16■□□□□ 0.5
CLN3-207ENST00000395653 DEFB108BQ8NET1 73 aa18.16■□□□□ 0.5
CLN3-207ENST00000395653 NEIL1Q96FI4 390 aaPredicted RBP18.16■□□□□ 0.5
CLN3-207ENST00000395653 CHST5Q9GZS9 411 aa18.16■□□□□ 0.5
CLN3-207ENST00000395653 HHLA2Q9UM44 414 aa18.16■□□□□ 0.5
CLN3-207ENST00000395653 LRCH1Q9Y2L9 728 aa18.16■□□□□ 0.5
CLN3-207ENST00000395653 SVEP1Q4LDE5 3571 aa18.16■□□□□ 0.5
CLN3-207ENST00000395653 E9PI62 339 aa18.15■□□□□ 0.5
CLN3-207ENST00000395653 C3orf80F5H4A9 247 aa18.15■□□□□ 0.5
CLN3-207ENST00000395653 NDUFA2O43678 99 aa18.15■□□□□ 0.5
CLN3-207ENST00000395653 CR1LQ2VPA4 569 aa18.15■□□□□ 0.5
CLN3-207ENST00000395653 CHRFAM7AQ494W8 412 aa18.15■□□□□ 0.5
CLN3-207ENST00000395653 ESCO2Q56NI9 601 aa18.15■□□□□ 0.5
CLN3-207ENST00000395653 DMRTC1Q5HYR2 192 aa18.15■□□□□ 0.5
CLN3-207ENST00000395653 NLRC3Q7RTR2 1065 aa18.15■□□□□ 0.5
CLN3-207ENST00000395653 BPIFB6Q8NFQ5 453 aa18.15■□□□□ 0.5
CLN3-207ENST00000395653 PP6455Q8WZ26 134 aa18.15■□□□□ 0.5
CLN3-207ENST00000395653 TECTBQ96PL2 329 aa18.15■□□□□ 0.5
CLN3-207ENST00000395653 SHARPINQ9H0F6 387 aa18.15■□□□□ 0.5
CLN3-207ENST00000395653 CHCHD3Q9NX63 227 aaKnown RBP18.15■□□□□ 0.5
CLN3-207ENST00000395653 POLR3KQ9Y2Y1 108 aaPredicted RBP18.15■□□□□ 0.5
CLN3-207ENST00000395653 PPIAL4CA0A0B4J2A2 164 aa18.15■□□□□ 0.5
CLN3-207ENST00000395653 TMEM212A6NML5 194 aa18.15■□□□□ 0.5
CLN3-207ENST00000395653 GATBO75879 557 aaKnown RBP18.15■□□□□ 0.5
CLN3-207ENST00000395653 MUC1P15941 1255 aaPredicted RBP18.15■□□□□ 0.5
CLN3-207ENST00000395653 SEC61A1P61619 476 aaKnown RBP18.15■□□□□ 0.5
CLN3-207ENST00000395653 CCDC58Q4VC31 144 aa18.15■□□□□ 0.5
CLN3-207ENST00000395653 FAM120AOSQ5T036 256 aa18.15■□□□□ 0.5
CLN3-207ENST00000395653 OR2G6Q5TZ20 316 aa18.15■□□□□ 0.5
CLN3-207ENST00000395653 OR8B3Q8NGG8 313 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms