RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 MEX3AA1L020 520 aaKnown RBP13.22□□□□□ -0.29
COL17A1-201ENST00000353479 RPS16P62249 146 aaKnown RBP13.22□□□□□ -0.29
COL17A1-201ENST00000353479 MASP2O00187 686 aa13.21□□□□□ -0.29
COL17A1-201ENST00000353479 AGFG2O95081 481 aa13.21□□□□□ -0.29
COL17A1-201ENST00000353479 SPINK2P20155 84 aa13.21□□□□□ -0.29
COL17A1-201ENST00000353479 TBPP20226 339 aa13.21□□□□□ -0.29
COL17A1-201ENST00000353479 ZNF266Q14584 549 aa13.21□□□□□ -0.29
COL17A1-201ENST00000353479 PNLIPRP3Q17RR3 467 aa13.21□□□□□ -0.29
COL17A1-201ENST00000353479 KHDC1LQ5JSQ8 128 aa13.21□□□□□ -0.29
COL17A1-201ENST00000353479 OR8B12Q8NGG6 310 aa13.21□□□□□ -0.29
COL17A1-201ENST00000353479 PCNPQ8WW12 178 aaKnown RBP13.21□□□□□ -0.29
COL17A1-201ENST00000353479 TINAGL1Q9GZM7 467 aaPredicted RBP13.21□□□□□ -0.29
COL17A1-201ENST00000353479 GNB4Q9HAV0 340 aa13.21□□□□□ -0.29
COL17A1-201ENST00000353479 TAAR3PQ9P1P4 343 aa13.21□□□□□ -0.29
COL17A1-201ENST00000353479 FAM96BQ9Y3D0 163 aa13.21□□□□□ -0.29
COL17A1-201ENST00000353479 ZDBF2Q9HCK1 2354 aa13.21□□□□□ -0.29
COL17A1-201ENST00000353479 HLA-DOBP13765 273 aa13.21□□□□□ -0.29
COL17A1-201ENST00000353479 TNFAIP6P98066 277 aaPredicted RBP13.21□□□□□ -0.29
COL17A1-201ENST00000353479 PMP22Q01453 160 aa13.21□□□□□ -0.29
COL17A1-201ENST00000353479 DYRK1AQ13627 763 aa13.21□□□□□ -0.29
COL17A1-201ENST00000353479 BAK1Q16611 211 aa13.21□□□□□ -0.29
COL17A1-201ENST00000353479 Q6ZNX1 250 aa13.21□□□□□ -0.29
COL17A1-201ENST00000353479 FAM181AQ8N9Y4 354 aa13.21□□□□□ -0.29
COL17A1-201ENST00000353479 OR4C16Q8NGL9 310 aa13.21□□□□□ -0.29
COL17A1-201ENST00000353479 LIN7CQ9NUP9 197 aaKnown RBP13.21□□□□□ -0.29
COL17A1-201ENST00000353479 TMEM30CPA0ZSE6 113 aa13.21□□□□□ -0.29
COL17A1-201ENST00000353479 ALDH3B1P43353 468 aa13.21□□□□□ -0.29
COL17A1-201ENST00000353479 UCNP55089 124 aa13.21□□□□□ -0.29
COL17A1-201ENST00000353479 SLC39A9Q9NUM3 307 aa13.21□□□□□ -0.29
COL17A1-201ENST00000353479 TMEM272A0A1B0GTI8 110 aa13.21□□□□□ -0.3
COL17A1-201ENST00000353479 PTHLHP12272 177 aa13.21□□□□□ -0.3
COL17A1-201ENST00000353479 ZNF17P17021 662 aa13.21□□□□□ -0.3
COL17A1-201ENST00000353479 OR3A4PP47883 348 aa13.21□□□□□ -0.3
COL17A1-201ENST00000353479 PIGPP57054 158 aa13.21□□□□□ -0.3
COL17A1-201ENST00000353479 PLPPR5Q32ZL2 321 aa13.21□□□□□ -0.3
COL17A1-201ENST00000353479 NUFIP2Q7Z417 695 aaKnown RBP13.21□□□□□ -0.3
COL17A1-201ENST00000353479 OR52N4Q8NGI2 321 aa13.21□□□□□ -0.3
COL17A1-201ENST00000353479 UQCC2Q9BRT2 126 aa13.21□□□□□ -0.3
COL17A1-201ENST00000353479 LGALS8O00214 317 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 SLC36A1Q7Z2H8 476 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 GLCCI1Q86VQ1 547 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 FAM58AQ8N1B3 248 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 SMIM4Q8WVI0 70 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 PTP4A1Q93096 173 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 RALGAPA2Q2PPJ7 1873 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 SNRPNP63162 240 aaKnown RBP13.2□□□□□ -0.3
COL17A1-201ENST00000353479 DBPQ10586 325 aaPredicted RBP13.2□□□□□ -0.3
COL17A1-201ENST00000353479 SLC7A5P1Q8MH63 180 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 EDARADDQ8WWZ3 215 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 DDOQ99489 341 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 GPR35Q9HC97 309 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 AMDHD2Q9Y303 409 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 NINQ8N4C6 2090 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 PPIHO43447 177 aaKnown RBP13.2□□□□□ -0.3
COL17A1-201ENST00000353479 TMEM127O75204 238 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 S100A11P31949 105 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 ZXDCQ2QGD7 858 aaPredicted RBP13.2□□□□□ -0.3
COL17A1-201ENST00000353479 HFEQ30201 348 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 GPX8Q8TED1 209 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 ARHGAP5-AS1Q96IT6 56 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 SRRQ9GZT4 340 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 HS3ST3B1Q9Y662 390 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 LSM6P62312 80 aaKnown RBP13.2□□□□□ -0.3
COL17A1-201ENST00000353479 TLE4Q04727 773 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 OR10V1Q8NGI7 309 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 LRRC29Q8WV35 223 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 A0A0A6YYJ9 748 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 CD3EP07766 207 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 SUB1P53999 127 aaKnown RBP eCLIP13.2□□□□□ -0.3
COL17A1-201ENST00000353479 HIKESHIQ53FT3 197 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 SSX3Q99909 188 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 DLL4Q9NR61 685 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 BOLA1Q9Y3E2 137 aa13.2□□□□□ -0.3
COL17A1-201ENST00000353479 OR4E1P0C645 316 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 ACSM4P0C7M7 580 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 OR13C8Q8NGS7 320 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 TGIF2Q9GZN2 237 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 CSAG2Q9Y5P2 127 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 GALR2O43603 387 aaPredicted RBP13.19□□□□□ -0.3
COL17A1-201ENST00000353479 TSPAN2O60636 221 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 CLDN20P56880 219 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 OR2W3Q7Z3T1 314 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 MYOZ1Q9NP98 299 aaPredicted RBP13.19□□□□□ -0.3
COL17A1-201ENST00000353479 AKIP1Q9NQ31 210 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 ONECUT1Q9UBC0 465 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 SCN5AQ14524 2016 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 SBF1O95248 1867 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 CST2P09228 141 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 GSK3AP49840 483 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 BTLAQ7Z6A9 289 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 RTN4IP1Q8WWV3 396 aaPredicted RBP13.19□□□□□ -0.3
COL17A1-201ENST00000353479 GPA33Q99795 319 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 ZNF230Q9UIE0 474 aaPredicted RBP13.19□□□□□ -0.3
COL17A1-201ENST00000353479 NGFP01138 241 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 CT45A6P0DMU7 189 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 CT45A5P0DMU8 189 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 CT45A7P0DMV0 189 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 MPGP29372 298 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 MMP15P51511 669 aa13.19□□□□□ -0.3
COL17A1-201ENST00000353479 INPP5JQ15735 1006 aaPredicted RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms