RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 ZNF610Q8N9Z0 462 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 SLC26A10Q8NG04 563 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 LIPHQ8WWY8 451 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 PTX4Q96A99 478 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 OR11A1Q9GZK7 315 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 PRSS38A1L453 326 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 CYB5BO43169 146 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 BGLAPP02818 100 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 CXCR1P25024 350 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 TAGLN2P37802 199 aaKnown RBP11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 NHLH2Q02577 135 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 ELOBQ15370 118 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 TMEM182Q6ZP80 229 aaPredicted RBP11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 KDF1Q8NAX2 398 aaPredicted RBP11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 GPR119Q8TDV5 335 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 RAB39BQ96DA2 213 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 ADOQ96SZ5 270 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 CRLF2Q9HC73 371 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 DOCK8Q8NF50 2099 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 SOX15O60248 233 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 DEDDO75618 318 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 ZNF93P35789 620 aaPredicted RBP11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 RPL27P61353 136 aaKnown RBP11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 CSNK2A1P68400 391 aaPredicted RBP11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 GPM6BQ13491 265 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 HIST3H2BBQ8N257 126 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 CSNK2A3Q8NEV1 391 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 CELSR3Q9NYQ7 3312 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 IGKV1D-8A0A087WSZ0 117 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 CDRT15L2A8MXV6 281 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 LINC01565O15544 149 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 HCRTR2O43614 444 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 FPR2P25090 351 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 BPIFB3P59826 476 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 SLC35A1P78382 337 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 SLC22A24Q8N4F4 322 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 SUMF2Q8NBJ7 301 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 CCDC3Q9BQI4 270 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 NELFAQ9H3P2 528 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 HSPB2A8KAH6 182 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 GPR89AB7ZAQ6 455 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 H3BQ15 152 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 PHOX2AO14813 284 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 GPR89BP0CG08 455 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 GJA4P35212 333 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 APOBEC1P41238 236 aaKnown RBP11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 TSPAN7P41732 249 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 GPR3P46089 330 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 SEC13P55735 322 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 HSPB2Q16082 182 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 GGNBP1Q5YKI7 109 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 OR14K1Q8NGZ2 314 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 GALNT14Q96FL9 552 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 UBQLN4Q9NRR5 601 aa11.88□□□□□ -0.51
CCDC88C-201ENST00000331194 TMEM14DPA8MWL7 114 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 SEC14L6B5MCN3 397 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 PPP1R2P9O14990 202 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 TNFSF14O43557 240 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 SYT7O43581 403 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 TTRP02766 147 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 HIST1H1DP16402 221 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 SNU13P55769 128 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 RAB38P57729 211 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 C1orf140Q5VVS0 124 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 OR2T2Q6IF00 324 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 Q7L0L9 218 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 PEG10Q86TG7 708 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 NKAIN3Q8N8D7 197 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 ZNF519Q8TB69 540 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 ABHD5Q8WTS1 349 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 SLC22A18Q96BI1 424 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 OR2M4Q96R27 311 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 MRPL37Q9BZE1 423 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 LUZP4Q9P127 313 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 CRTAPO75718 401 aaPredicted RBP11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 BPNT1O95861 308 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 JMJD7P0C870 316 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 SMAD4Q13485 552 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 KIR2DS3Q14952 304 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 UBE2V2Q15819 145 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 FNDC7Q5VTL7 733 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 ZNF385CQ66K41 422 aaPredicted RBP11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 OPN5Q6U736 354 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 C17orf78Q8N4C9 275 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 OR10AD1Q8NGE0 317 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 NPRL2Q8WTW4 380 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 OSGIN2Q9Y236 505 aa11.87□□□□□ -0.51
CCDC88C-201ENST00000331194 TSTD3H0UI37 97 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 SCDO00767 359 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 MBPP02686 304 aaPredicted RBP11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 GAPDHP04406 335 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 H2BFMP0C1H6 154 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 GIMD1P0DJR0 217 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 CHATP28329 748 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 RBMXP38159 391 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 VAX1Q5SQQ9 334 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 TSPO2Q5TGU0 170 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 TCEAL6Q6IPX3 200 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms