RNA–Protein interactions for RNA: ENST00000299847.6

CHRFAM7A-201, Transcript of CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHRFAM7A, Length 6,220 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRFAM7A-201ENST00000299847 WNT1P04628 370 aa12.16□□□□□ -0.46
CHRFAM7A-201ENST00000299847 CD1EP15812 388 aa12.16□□□□□ -0.46
CHRFAM7A-201ENST00000299847 NQO2P16083 231 aa12.16□□□□□ -0.46
CHRFAM7A-201ENST00000299847 NOVA1P51513 510 aaKnown RBP12.16□□□□□ -0.46
CHRFAM7A-201ENST00000299847 RPS4XP62701 263 aaKnown RBP12.16□□□□□ -0.46
CHRFAM7A-201ENST00000299847 WDR38Q5JTN6 314 aa12.16□□□□□ -0.46
CHRFAM7A-201ENST00000299847 SYS1Q8N2H4 156 aa12.16□□□□□ -0.46
CHRFAM7A-201ENST00000299847 NPEPL1Q8NDH3 523 aa12.16□□□□□ -0.46
CHRFAM7A-201ENST00000299847 PELI1Q96FA3 418 aa12.16□□□□□ -0.46
CHRFAM7A-201ENST00000299847 FOXJ3Q9UPW0 622 aa12.16□□□□□ -0.46
CHRFAM7A-201ENST00000299847 R4GN57 208 aa12.16□□□□□ -0.46
CHRFAM7A-201ENST00000299847 A0A1W2PNV4 684 aa12.16□□□□□ -0.46
CHRFAM7A-201ENST00000299847 GYPAP02724 150 aa12.16□□□□□ -0.46
CHRFAM7A-201ENST00000299847 FGF8P55075 233 aaPredicted RBP12.16□□□□□ -0.46
CHRFAM7A-201ENST00000299847 IL21Q9HBE4 155 aa12.16□□□□□ -0.46
CHRFAM7A-201ENST00000299847 SSC5DA1L4H1 1573 aa12.16□□□□□ -0.46
CHRFAM7A-201ENST00000299847 C3orf80F5H4A9 247 aa12.16□□□□□ -0.46
CHRFAM7A-201ENST00000299847 GOSR1O95249 250 aa12.16□□□□□ -0.46
CHRFAM7A-201ENST00000299847 CDC34P49427 236 aaPredicted RBP12.16□□□□□ -0.46
CHRFAM7A-201ENST00000299847 DHODHQ02127 395 aa12.16□□□□□ -0.46
CHRFAM7A-201ENST00000299847 C6orf201Q7Z4U5 140 aa12.16□□□□□ -0.46
CHRFAM7A-201ENST00000299847 CORO2AQ92828 525 aa12.16□□□□□ -0.46
CHRFAM7A-201ENST00000299847 VPS25Q9BRG1 176 aa12.16□□□□□ -0.46
CHRFAM7A-201ENST00000299847 IER2Q9BTL4 223 aa12.16□□□□□ -0.46
CHRFAM7A-201ENST00000299847 J3KRW8 73 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 NDUFB3O43676 98 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 ENDOGQ14249 297 aaKnown RBP12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 VAMP3Q15836 100 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 PSG11Q9UQ72 335 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 A0A1B0GUH1 482 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 PPIHO43447 177 aaKnown RBP12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 TSPAN12O95859 305 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 SMIM17P0DL12 118 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 FFAR4Q5NUL3 377 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 GAL3ST2Q9H3Q3 398 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 TRBV5-4A0A0C4DH59 114 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 SH2D7A6NKC9 451 aaPredicted RBP12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 MKRN2OSH3BPM6 223 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 BCL2L11O43521 198 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 FZD5Q13467 585 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 COL19A1Q14993 1142 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 LRRC10Q5BKY1 277 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 SLC16A12Q6ZSM3 486 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 C10orf90Q96M02 699 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 TAAR9Q96RI9 348 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 VN1R1Q9GZP7 353 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 BCL2L10Q9HD36 194 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 SPTY2D1-AS1A0A0U1RR47 76 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 DUS4LO95620 317 aaKnown RBP12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 IL5P05113 134 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 HYAL1Q12794 435 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 MIDNQ504T8 468 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 LYG1Q8N1E2 194 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 OTOSQ8NHW6 89 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 RHOFQ9HBH0 211 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 AKIP1Q9NQ31 210 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 CLEC1BQ9P126 229 aa12.15□□□□□ -0.46
CHRFAM7A-201ENST00000299847 B3GALNT1O75752 331 aa12.15□□□□□ -0.47
CHRFAM7A-201ENST00000299847 BAP18Q8IXM2 172 aa12.15□□□□□ -0.47
CHRFAM7A-201ENST00000299847 RNASEKQ6P5S7 137 aaKnown RBP12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 TMEM229BQ8NBD8 167 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 POM121L2Q96KW2 1035 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 RBM14Q96PK6 669 aaKnown RBP12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 CDK5RAP2Q96SN8 1893 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 CBY3A6NI87 242 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 S100A4P26447 101 aaKnown RBP12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 CAMKMTQ7Z624 323 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 TP53I13Q8NBR0 393 aaPredicted RBP12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 TSPAN32Q96QS1 320 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 FGF20Q9NP95 211 aaPredicted RBP12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 TRAPPC4Q9Y296 219 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 FAM157AC9JC47 383 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 Q3ZCU0 254 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 WDR31Q8NA23 367 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 ZNF680Q8NEM1 530 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 OR2M7Q8NG81 312 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 OR6S1Q8NH40 331 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 ZG16BQ96DA0 208 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 TMPRSS5Q9H3S3 457 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 HPP00738 406 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 RPL34P49207 117 aaKnown RBP12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 ZNF628Q5EBL2 1059 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 ANKRD37Q7Z713 158 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 OR4C3Q8NH37 302 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 PLEKHA2Q9HB19 425 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 ZNF586Q9NXT0 402 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 POMT1Q9Y6A1 747 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 PLCH1Q4KWH8 1693 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 CTSVO60911 334 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 CDK5Q00535 292 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 FAM219AQ8IW50 185 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 PRDM7Q9NQW5 492 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 ERRFI1Q9UJM3 462 aaPredicted RBP12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 TRAPPC1Q9Y5R8 145 aa12.14□□□□□ -0.47
CHRFAM7A-201ENST00000299847 LAMB1P07942 1786 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 CCDC187A0A096LP49 1063 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 APELAP0DMC3 54 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 THBS4P35443 961 aa12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 CNN1P51911 297 aaKnown RBP12.13□□□□□ -0.47
CHRFAM7A-201ENST00000299847 ZNF429Q86V71 674 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms