RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 SHOXO15266 292 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 HTR3BO95264 441 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 ZNF32P17041 273 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 CYB561P49447 251 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 SSPNQ14714 243 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 RAB35Q15286 201 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 PNLIPRP3Q17RR3 467 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 H3F3CQ6NXT2 135 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 OR6K3Q8NGY3 331 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 FGFBP3Q8TAT2 258 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 ABHD3Q8WU67 409 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 HAS2Q92819 552 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 RBPMSQ93062 196 aaKnown RBP17.53■□□□□ 0.4
VPS53-201ENST00000291074 MARVELD3Q96A59 401 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 CCDC120Q96HB5 630 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 OCSTAMPQ9BR26 566 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 C5orf66Q9H5L9 145 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 COMMD9Q9P000 198 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 hCG_1807616A0A1W2PRN6 198 aa17.52■□□□□ 0.4
VPS53-201ENST00000291074 DNPH1O43598 174 aa17.52■□□□□ 0.4
VPS53-201ENST00000291074 PLATP00750 562 aa17.52■□□□□ 0.4
VPS53-201ENST00000291074 SERPINA7P05543 415 aa17.52■□□□□ 0.4
VPS53-201ENST00000291074 VAX1Q5SQQ9 334 aa17.52■□□□□ 0.4
VPS53-201ENST00000291074 C11orf87Q6NUJ2 197 aa17.52■□□□□ 0.4
VPS53-201ENST00000291074 OR5H2Q8NGV7 314 aa17.52■□□□□ 0.4
VPS53-201ENST00000291074 OR2V1Q8NHB1 315 aa17.52■□□□□ 0.4
VPS53-201ENST00000291074 PECRQ9BY49 303 aa17.52■□□□□ 0.4
VPS53-201ENST00000291074 REG4Q9BYZ8 158 aa17.52■□□□□ 0.4
VPS53-201ENST00000291074 MTRF1O75570 445 aaKnown RBP17.52■□□□□ 0.39
VPS53-201ENST00000291074 JMJD7P0C870 316 aa17.52■□□□□ 0.39
VPS53-201ENST00000291074 ALDH3B1P43353 468 aa17.52■□□□□ 0.39
VPS53-201ENST00000291074 RGS7BPQ6MZT1 257 aaPredicted RBP17.52■□□□□ 0.39
VPS53-201ENST00000291074 TMEM230Q96A57 120 aa17.52■□□□□ 0.39
VPS53-201ENST00000291074 REEP6Q96HR9 211 aa17.52■□□□□ 0.39
VPS53-201ENST00000291074 S100A13Q99584 98 aa17.52■□□□□ 0.39
VPS53-201ENST00000291074 FOXJ2Q9P0K8 574 aa17.52■□□□□ 0.39
VPS53-201ENST00000291074 KNTC1P50748 2209 aa17.52■□□□□ 0.39
VPS53-201ENST00000291074 C9orf172C9J069 976 aa17.51■□□□□ 0.39
VPS53-201ENST00000291074 KCNAB3O43448 404 aa17.51■□□□□ 0.39
VPS53-201ENST00000291074 ANGPTL7O43827 346 aa17.51■□□□□ 0.39
VPS53-201ENST00000291074 DUS4LO95620 317 aaKnown RBP17.51■□□□□ 0.39
VPS53-201ENST00000291074 IGHV3-9P01782 118 aa17.51■□□□□ 0.39
VPS53-201ENST00000291074 SNU13P55769 128 aaKnown RBP17.51■□□□□ 0.39
VPS53-201ENST00000291074 FGL1Q08830 312 aa17.51■□□□□ 0.39
VPS53-201ENST00000291074 CEACAM16Q2WEN9 425 aa17.51■□□□□ 0.39
VPS53-201ENST00000291074 FAHD2BQ6P2I3 314 aaPredicted RBP17.51■□□□□ 0.39
VPS53-201ENST00000291074 Q6ZSR3 168 aa17.51■□□□□ 0.39
VPS53-201ENST00000291074 RELL2Q8NC24 303 aaPredicted RBP17.51■□□□□ 0.39
VPS53-201ENST00000291074 OR13G1Q8NGZ3 307 aa17.51■□□□□ 0.39
VPS53-201ENST00000291074 OR1F12Q8NHA8 337 aa17.51■□□□□ 0.39
VPS53-201ENST00000291074 FAHD2AQ96GK7 314 aa17.51■□□□□ 0.39
VPS53-201ENST00000291074 THOC3Q96J01 351 aaKnown RBP17.51■□□□□ 0.39
VPS53-201ENST00000291074 SDHAF2Q9NX18 166 aa17.51■□□□□ 0.39
VPS53-201ENST00000291074 TNFSF18Q9UNG2 199 aa17.51■□□□□ 0.39
VPS53-201ENST00000291074 A0A1W2PNU3 283 aaPredicted RBP17.51■□□□□ 0.39
VPS53-201ENST00000291074 LNP1A1A4G5 178 aa17.51■□□□□ 0.39
VPS53-201ENST00000291074 APOC1P02654 83 aa17.51■□□□□ 0.39
VPS53-201ENST00000291074 LCATP04180 440 aa17.51■□□□□ 0.39
VPS53-201ENST00000291074 HLA-GP17693 338 aa17.51■□□□□ 0.39
VPS53-201ENST00000291074 GABRR1P24046 479 aa17.51■□□□□ 0.39
VPS53-201ENST00000291074 PXDC1Q5TGL8 231 aa17.51■□□□□ 0.39
VPS53-201ENST00000291074 ABLIM2Q6H8Q1 611 aa17.51■□□□□ 0.39
VPS53-201ENST00000291074 C6orf201Q7Z4U5 140 aa17.51■□□□□ 0.39
VPS53-201ENST00000291074 SEMA6DQ8NFY4 1073 aa17.51■□□□□ 0.39
VPS53-201ENST00000291074 SPRY1O43609 319 aaPredicted RBP17.5■□□□□ 0.39
VPS53-201ENST00000291074 CST2P09228 141 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 AGTR1P30556 359 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 DRAM2Q6UX65 266 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 GALNTL5Q7Z4T8 443 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 SLC51BQ86UW2 128 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 ARRDC1Q8N5I2 433 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 NAXEQ8NCW5 288 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 CSNK2A3Q8NEV1 391 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 OR52H1Q8NGJ2 320 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 ZNF581Q9P0T4 197 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 GHRLQ9UBU3 117 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 GPR132Q9UNW8 380 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 C13orf42A0A1B0GVH6 325 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 FAM230AA0A1W2PPH8 454 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 RNF222A6NCQ9 220 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 TMEM225BP0DP42 221 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 HTR5AP47898 357 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 MTCP1P56278 107 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 FOXO1Q12778 655 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 SLC9A3R2Q15599 337 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 TMEM65Q6PI78 240 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 DBX2Q6ZNG2 339 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 SLC16A14Q7RTX9 510 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 TAAR9Q96RI9 348 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 FOXB1Q99853 325 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 HDHD3Q9BSH5 251 aaPredicted RBP17.5■□□□□ 0.39
VPS53-201ENST00000291074 HES7Q9BYE0 225 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 LRFN1Q9P244 771 aa17.5■□□□□ 0.39
VPS53-201ENST00000291074 CALCRP30988 508 aa17.49■□□□□ 0.39
VPS53-201ENST00000291074 SERPINF1P36955 418 aa17.49■□□□□ 0.39
VPS53-201ENST00000291074 DLSTP36957 453 aa17.49■□□□□ 0.39
VPS53-201ENST00000291074 PSG4Q00888 419 aa17.49■□□□□ 0.39
VPS53-201ENST00000291074 EIF3IQ13347 325 aaKnown RBP17.49■□□□□ 0.39
VPS53-201ENST00000291074 FAM189A2Q15884 450 aa17.49■□□□□ 0.39
VPS53-201ENST00000291074 ACTBL2Q562R1 376 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms