RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 PIGCQ92535 297 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 FAM46BQ96A09 425 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 SPSB1Q96BD6 273 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 OBP2BQ9NPH6 170 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 KCNN3Q9UGI6 736 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 RAB22AQ9UL26 194 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 TMEM14DPA8MWL7 114 aa14.54□□□□□ -0.08
CLN3-252ENST00000636907 MSTNO14793 375 aa14.54□□□□□ -0.08
CLN3-252ENST00000636907 BMP5P22003 454 aa14.54□□□□□ -0.08
CLN3-252ENST00000636907 IL32P24001 234 aa14.54□□□□□ -0.08
CLN3-252ENST00000636907 MRPL49Q13405 166 aaKnown RBP14.54□□□□□ -0.08
CLN3-252ENST00000636907 OR5L1Q8NGL2 311 aa14.54□□□□□ -0.08
CLN3-252ENST00000636907 OPA3Q9H6K4 179 aa14.54□□□□□ -0.08
CLN3-252ENST00000636907 CRIM1Q9NZV1 1036 aa14.54□□□□□ -0.08
CLN3-252ENST00000636907 FBLN5Q9UBX5 448 aa14.54□□□□□ -0.08
CLN3-252ENST00000636907 ZGRF1Q86YA3 2104 aa14.53□□□□□ -0.08
CLN3-252ENST00000636907 MAP1BP46821 2468 aaKnown RBP14.53□□□□□ -0.08
CLN3-252ENST00000636907 TRAV18A0A075B6X5 111 aa14.53□□□□□ -0.08
CLN3-252ENST00000636907 FAM230AA0A1W2PPH8 454 aa14.53□□□□□ -0.08
CLN3-252ENST00000636907 GABARAPH6UMI1 98 aa14.53□□□□□ -0.08
CLN3-252ENST00000636907 ICMTO60725 284 aa14.53□□□□□ -0.08
CLN3-252ENST00000636907 SMPD2O60906 423 aa14.53□□□□□ -0.08
CLN3-252ENST00000636907 TPPPO94811 219 aa14.53□□□□□ -0.08
CLN3-252ENST00000636907 PRKACBP22694 351 aa14.53□□□□□ -0.08
CLN3-252ENST00000636907 PTGFRP43088 359 aa14.53□□□□□ -0.08
CLN3-252ENST00000636907 PLCXD3Q63HM9 321 aa14.53□□□□□ -0.08
CLN3-252ENST00000636907 CCBE1Q6UXH8 406 aaPredicted RBP14.53□□□□□ -0.08
CLN3-252ENST00000636907 MOB3CQ70IA8 216 aa14.53□□□□□ -0.08
CLN3-252ENST00000636907 C1QL2Q7Z5L3 287 aa14.53□□□□□ -0.08
CLN3-252ENST00000636907 OR52I2Q8NH67 350 aa14.53□□□□□ -0.08
CLN3-252ENST00000636907 TNFAIP8L1Q8WVP5 186 aa14.53□□□□□ -0.08
CLN3-252ENST00000636907 PHF21AQ96BD5 680 aa14.53□□□□□ -0.08
CLN3-252ENST00000636907 WBP1Q96G27 269 aa14.53□□□□□ -0.08
CLN3-252ENST00000636907 FAIMQ9NVQ4 179 aa14.53□□□□□ -0.08
CLN3-252ENST00000636907 EIF3KQ9UBQ5 218 aaKnown RBP14.53□□□□□ -0.08
CLN3-252ENST00000636907 AMDHD2Q9Y303 409 aa14.53□□□□□ -0.08
CLN3-252ENST00000636907 ZZEF1O43149 2961 aa14.53□□□□□ -0.08
CLN3-252ENST00000636907 IGKV1-27A0A075B6S5 117 aa14.52□□□□□ -0.08
CLN3-252ENST00000636907 ZNF850A8MQ14 1090 aa14.52□□□□□ -0.08
CLN3-252ENST00000636907 A8MXE2 369 aa14.52□□□□□ -0.08
CLN3-252ENST00000636907 J3QW42 95 aa14.52□□□□□ -0.08
CLN3-252ENST00000636907 FAM157BP0CG42 384 aa14.52□□□□□ -0.08
CLN3-252ENST00000636907 NAT2P11245 290 aa14.52□□□□□ -0.08
CLN3-252ENST00000636907 RANBP1P43487 201 aa14.52□□□□□ -0.08
CLN3-252ENST00000636907 SRP9P49458 86 aaKnown RBP14.52□□□□□ -0.08
CLN3-252ENST00000636907 MTCP1P56278 107 aa14.52□□□□□ -0.08
CLN3-252ENST00000636907 MOGAT2Q3SYC2 334 aa14.52□□□□□ -0.08
CLN3-252ENST00000636907 SPATA46Q5T0L3 261 aa14.52□□□□□ -0.08
CLN3-252ENST00000636907 OR2W3Q7Z3T1 314 aa14.52□□□□□ -0.08
CLN3-252ENST00000636907 TMEM104Q8NE00 496 aa14.52□□□□□ -0.08
CLN3-252ENST00000636907 C15orf40Q8WUR7 153 aa14.52□□□□□ -0.08
CLN3-252ENST00000636907 ITFG2Q969R8 447 aa14.52□□□□□ -0.08
CLN3-252ENST00000636907 S100PBPQ96BU1 408 aa14.52□□□□□ -0.08
CLN3-252ENST00000636907 BORCS8Q96FH0 119 aa14.52□□□□□ -0.08
CLN3-252ENST00000636907 SLC22A4Q9H015 551 aa14.52□□□□□ -0.08
CLN3-252ENST00000636907 PIGMQ9H3S5 423 aa14.52□□□□□ -0.08
CLN3-252ENST00000636907 NEK6Q9HC98 313 aa14.52□□□□□ -0.08
CLN3-252ENST00000636907 GPR160Q9UJ42 338 aa14.52□□□□□ -0.08
CLN3-252ENST00000636907 SLC25A15Q9Y619 301 aa14.52□□□□□ -0.08
CLN3-252ENST00000636907 A0A1W2PP11 408 aa14.52□□□□□ -0.09
CLN3-252ENST00000636907 MEIOCA2RUB1 952 aa14.52□□□□□ -0.09
CLN3-252ENST00000636907 CD300LBA8K4G0 201 aa14.52□□□□□ -0.09
CLN3-252ENST00000636907 EEF1E1-BLOC1S5C9J1V9 151 aa14.52□□□□□ -0.09
CLN3-252ENST00000636907 LYRM1O43325 122 aa14.52□□□□□ -0.09
CLN3-252ENST00000636907 IGLV1-44P01699 117 aa14.52□□□□□ -0.09
CLN3-252ENST00000636907 CECR9P0C854 216 aa14.52□□□□□ -0.09
CLN3-252ENST00000636907 UBBP0CG47 229 aa14.52□□□□□ -0.09
CLN3-252ENST00000636907 PSMB1P20618 241 aaKnown RBP14.52□□□□□ -0.09
CLN3-252ENST00000636907 ALDH3B1P43353 468 aa14.52□□□□□ -0.09
CLN3-252ENST00000636907 ZP1P60852 638 aa14.52□□□□□ -0.09
CLN3-252ENST00000636907 MRPS10P82664 201 aaKnown RBP14.52□□□□□ -0.09
CLN3-252ENST00000636907 HACD4Q5VWC8 232 aa14.52□□□□□ -0.09
CLN3-252ENST00000636907 LHFPL2Q6ZUX7 228 aa14.52□□□□□ -0.09
CLN3-252ENST00000636907 KRT74Q7RTS7 529 aa14.52□□□□□ -0.09
CLN3-252ENST00000636907 ACBD4Q8NC06 268 aa14.52□□□□□ -0.09
CLN3-252ENST00000636907 CSNK2A3Q8NEV1 391 aa14.52□□□□□ -0.09
CLN3-252ENST00000636907 TECTBQ96PL2 329 aa14.52□□□□□ -0.09
CLN3-252ENST00000636907 NEDD4LQ96PU5 975 aa14.52□□□□□ -0.09
CLN3-252ENST00000636907 PAPOLGQ9BWT3 736 aaKnown RBP14.52□□□□□ -0.09
CLN3-252ENST00000636907 ZNF629Q9UEG4 869 aaPredicted RBP14.52□□□□□ -0.09
CLN3-252ENST00000636907 ING4Q9UNL4 249 aa14.52□□□□□ -0.09
CLN3-252ENST00000636907 SLC7A11Q9UPY5 501 aa14.52□□□□□ -0.09
CLN3-252ENST00000636907 DSPP15924 2871 aaKnown RBP14.52□□□□□ -0.09
CLN3-252ENST00000636907 A0A0A6YYH2 397 aa14.51□□□□□ -0.09
CLN3-252ENST00000636907 METTL21EPA6NDL7 271 aa14.51□□□□□ -0.09
CLN3-252ENST00000636907 TMEM8BA6NDV4 472 aa14.51□□□□□ -0.09
CLN3-252ENST00000636907 A6NJ64 397 aa14.51□□□□□ -0.09
CLN3-252ENST00000636907 ORC5O43913 435 aa14.51□□□□□ -0.09
CLN3-252ENST00000636907 CDC14BO60729 498 aa14.51□□□□□ -0.09
CLN3-252ENST00000636907 MPIG6BO95866 241 aa14.51□□□□□ -0.09
CLN3-252ENST00000636907 ZNF35P13682 527 aa14.51□□□□□ -0.09
CLN3-252ENST00000636907 GDNFP39905 211 aa14.51□□□□□ -0.09
CLN3-252ENST00000636907 RBP2P50120 134 aa14.51□□□□□ -0.09
CLN3-252ENST00000636907 FUT6P51993 359 aa14.51□□□□□ -0.09
CLN3-252ENST00000636907 ERVS71-1P61550 626 aa14.51□□□□□ -0.09
CLN3-252ENST00000636907 PPP1CBP62140 327 aa14.51□□□□□ -0.09
CLN3-252ENST00000636907 PRDX4Q13162 271 aa14.51□□□□□ -0.09
CLN3-252ENST00000636907 SLC22A6Q4U2R8 563 aa14.51□□□□□ -0.09
CLN3-252ENST00000636907 TIMM23BQ5SRD1 257 aa14.51□□□□□ -0.09
CLN3-252ENST00000636907 KDF1Q8NAX2 398 aaPredicted RBP14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms