RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 OR3A2P47893 321 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 DCAF7P61962 342 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 HYAL1Q12794 435 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 ADAMTSL4Q6UY14 1074 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 TMEM104Q8NE00 496 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 KISS1RQ969F8 398 aaPredicted RBP9.1□□□□□ -0.95
VPS39-214ENST00000614932 MOAP1Q96BY2 351 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 AIF1LQ9BQI0 150 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 CST11Q9H112 138 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 CNTD2Q9H8S5 307 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 HSPB7Q9UBY9 170 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 ANKUB1A6NFN9 424 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 ZNF705FA8MVS1 300 aaPredicted RBP9.1□□□□□ -0.95
VPS39-214ENST00000614932 C4orf51C9J302 202 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 B4GALT2O60909 372 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 DUS4LO95620 317 aaKnown RBP9.1□□□□□ -0.95
VPS39-214ENST00000614932 ZNF705DP0CH99 300 aaPredicted RBP9.1□□□□□ -0.95
VPS39-214ENST00000614932 ZNF705BP0CI00 300 aaPredicted RBP9.1□□□□□ -0.95
VPS39-214ENST00000614932 PDLIM4P50479 330 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 CEBPGP53567 150 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 PRPS1P60891 318 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 COL10A1Q03692 680 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 ITPRIPL2Q3MIP1 535 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 TMEM196Q5HYL7 178 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 C1orf189Q5VU69 101 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 DPY19L2P2Q6ZN68 376 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 SNIP1Q8TAD8 396 aaKnown RBP9.1□□□□□ -0.95
VPS39-214ENST00000614932 LIPHQ8WWY8 451 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 TSACCQ96A04 125 aaPredicted RBP9.1□□□□□ -0.95
VPS39-214ENST00000614932 TVP23CQ96ET8 276 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 HIST1H2AAQ96QV6 131 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 GPR35Q9HC97 309 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 NTNG1Q9Y2I2 539 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 SDK1Q7Z5N4 2213 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 KIAA1549LQ6ZVL6 1849 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 TRAV18A0A075B6X5 111 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 TRBV2A0A0J9YWF9 115 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 SLC22A31A6NKX4 558 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 BHLHE40O14503 412 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 JTBO76095 146 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 OR5G3P0C626 314 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 PTNP21246 168 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 LMO1P25800 156 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 BSGP35613 385 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 RPL4P36578 427 aaKnown RBP9.09□□□□□ -0.95
VPS39-214ENST00000614932 SSR2P43308 183 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 CAMLGP49069 296 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 MMP16P51512 607 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 RAB11BQ15907 218 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 TAF9Q16594 264 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 PRPF38BQ5VTL8 546 aaKnown RBP9.09□□□□□ -0.95
VPS39-214ENST00000614932 ANKRD16Q6P6B7 361 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 SFTPA2Q8IWL1 248 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 OR52E1Q8NGJ3 308 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 ADAMTS18Q8TE60 1221 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 ACY3Q96HD9 319 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 C1QTNF2Q9BXJ5 285 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 MS4A8Q9BY19 250 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 AICDAQ9GZX7 198 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 FGF22Q9HCT0 170 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 SLC17A5Q9NRA2 495 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 VSIG4Q9Y279 399 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 HEATR5BQ9P2D3 2071 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 IGHV2-70DA0A0C4DH43 119 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 FAM221AA4D161 298 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 FTCDNL1E5RQL4 147 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 HSD17B6O14756 317 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 GOSR1O95249 250 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 GAPDHP04406 335 aaKnown RBP9.09□□□□□ -0.95
VPS39-214ENST00000614932 CD1AP06126 327 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 CEACAM5P06731 702 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 ZNF735P0CB33 412 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 LAMP2P13473 410 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 SLC16A1P53985 500 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 ARF6P62330 175 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 CSNK1G2P78368 415 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 RUNX2Q13950 521 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 TP53I3Q53FA7 332 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 ZNF793Q6ZN11 406 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 C9orf40Q8IXQ3 194 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 KLHDC8AQ8IYD2 350 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 H1FOOQ8IZA3 346 aaPredicted RBP9.09□□□□□ -0.95
VPS39-214ENST00000614932 LFNGQ8NES3 379 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 GPX8Q8TED1 209 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 RPUSD4Q96CM3 377 aaKnown RBP9.09□□□□□ -0.95
VPS39-214ENST00000614932 BPIFA2Q96DR5 249 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 WDR34Q96EX3 536 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 TMEM56Q96MV1 263 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 TBX15Q96SF7 602 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 PRRT1Q99946 306 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 PHPT1Q9NRX4 125 aaPredicted RBP9.09□□□□□ -0.95
VPS39-214ENST00000614932 CLEC5AQ9NY25 188 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 RAB22AQ9UL26 194 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 CYP8B1Q9UNU6 501 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 TMEM56-RWDD3S4R434 201 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 SCN2AQ99250 2005 aa9.09□□□□□ -0.95
VPS39-214ENST00000614932 TRBV24-1A0A075B6N3 115 aa9.09□□□□□ -0.96
VPS39-214ENST00000614932 A0A1W2PR48 441 aa9.09□□□□□ -0.96
VPS39-214ENST00000614932 OR4C45A6NMZ5 311 aa9.09□□□□□ -0.96
VPS39-214ENST00000614932 NDUFS4O43181 175 aa9.09□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms