RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 ARL6IP1Q15041 203 aa11.19□□□□□ -0.62
LIG1-221ENST00000613670 TSPO2Q5TGU0 170 aa11.19□□□□□ -0.62
LIG1-221ENST00000613670 LRRC75AQ8NAA5 344 aa11.19□□□□□ -0.62
LIG1-221ENST00000613670 SEMA6DQ8NFY4 1073 aa11.19□□□□□ -0.62
LIG1-221ENST00000613670 OR5L2Q8NGL0 311 aa11.19□□□□□ -0.62
LIG1-221ENST00000613670 SEC11CQ9BY50 192 aa11.19□□□□□ -0.62
LIG1-221ENST00000613670 A0A1W2PPH5 198 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 TRAPPC6AO75865 159 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 IFNA4P05014 189 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 GUSBP08236 651 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 EN2P19622 333 aaPredicted RBP11.18□□□□□ -0.62
LIG1-221ENST00000613670 CHATP28329 748 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 ZNF84P51523 738 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 AFF3P51826 1226 aaKnown RBP11.18□□□□□ -0.62
LIG1-221ENST00000613670 PIGPP57054 158 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 MFAP5Q13361 173 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 CSRP2Q16527 193 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 HAGHQ16775 308 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 OR2A2Q6IF42 318 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 DRAM2Q6UX65 266 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 ZNF695Q8IW36 515 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 EIF4E3Q8N5X7 224 aaKnown RBP11.18□□□□□ -0.62
LIG1-221ENST00000613670 REEP6Q96HR9 211 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 OR10C1Q96KK4 312 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 PRRX2Q99811 253 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 A6NCN8 305 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 H7C1Q1 480 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 NR2C1P13056 603 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 ROM1Q03395 351 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 GUK1Q16774 197 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 PTCRAQ6ISU1 281 aaPredicted RBP11.18□□□□□ -0.62
LIG1-221ENST00000613670 RPUSD3Q6P087 351 aaKnown RBP11.18□□□□□ -0.62
LIG1-221ENST00000613670 C5orf46Q6UWT4 87 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 DOK3Q7L591 496 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 C9orf40Q8IXQ3 194 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 GLYATL2Q8WU03 294 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 VN1R1Q9GZP7 353 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 RAB33BQ9H082 229 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 DKKL1Q9UK85 242 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 IGHV3-15A0A0B4J1V0 119 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 TAAR5O14804 337 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 FPR2P25090 351 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 S100GP29377 79 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 APOBEC1P41238 236 aaKnown RBP11.18□□□□□ -0.62
LIG1-221ENST00000613670 RNF4P78317 190 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 DLX2Q07687 328 aaPredicted RBP11.18□□□□□ -0.62
LIG1-221ENST00000613670 MYBPHQ13203 477 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 KISS1Q15726 138 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 AKR1C8PQ5T2L2 129 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 BIVMQ86UB2 503 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 TCEAL7Q9BRU2 100 aa11.18□□□□□ -0.62
LIG1-221ENST00000613670 WDR87Q6ZQQ6 2873 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 CST4P01036 141 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 HOXC4P09017 264 aaPredicted RBP11.17□□□□□ -0.62
LIG1-221ENST00000613670 LPAR6P43657 344 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 AWAT1Q58HT5 328 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 C1orf53Q5VUE5 145 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 OPN5Q6U736 354 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 ZNF561Q8N587 486 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 BHLHE23Q8NDY6 225 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 SLC30A7Q8NEW0 376 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 OR1N1Q8NGS0 311 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 SLC22A8Q8TCC7 542 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 PIGCQ92535 297 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 RRNAD1Q96FB5 475 aaKnown RBP11.17□□□□□ -0.62
LIG1-221ENST00000613670 SOX7Q9BT81 388 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 ULBP2Q9BZM5 246 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 NMES1Q9C002 83 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 MAGT1Q9H0U3 335 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 CA14Q9ULX7 337 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 SLC7A11Q9UPY5 501 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 HTTP42858 3142 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 C1QL1O75973 258 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 OR2C1O95371 312 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 NCMAPQ5T1S8 102 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 GPR157Q5UAW9 335 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 RTN4RL2Q86UN3 420 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 OR8B12Q8NGG6 310 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 OR8U1Q8NH10 309 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 RTN4IP1Q8WWV3 396 aaPredicted RBP11.17□□□□□ -0.62
LIG1-221ENST00000613670 SCARF2Q96GP6 870 aaPredicted RBP11.17□□□□□ -0.62
LIG1-221ENST00000613670 ADAM19Q9H013 955 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 SPRY1O43609 319 aaPredicted RBP11.17□□□□□ -0.62
LIG1-221ENST00000613670 RRADP55042 308 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 UNC119Q13432 240 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 ANKRD55Q3KP44 614 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 FAHD2BQ6P2I3 314 aaPredicted RBP11.17□□□□□ -0.62
LIG1-221ENST00000613670 Q7L0L9 218 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 AQP3Q92482 292 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 SPTSSAQ969W0 71 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 FAHD2AQ96GK7 314 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 MMP17Q9ULZ9 603 aa11.17□□□□□ -0.62
LIG1-221ENST00000613670 A0A1B0GX78 115 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 CD74P04233 296 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 TAGLN2P37802 199 aaKnown RBP11.16□□□□□ -0.62
LIG1-221ENST00000613670 MNX1P50219 401 aaPredicted RBP11.16□□□□□ -0.62
LIG1-221ENST00000613670 DVL1P1P54792 670 aaPredicted RBP11.16□□□□□ -0.62
LIG1-221ENST00000613670 HFEQ30201 348 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 THEM4Q5T1C6 240 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 107.7 ms