RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 SERPINA2P20848 420 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 IGFBP4P22692 258 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 CFPP27918 469 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 HSD11B1P28845 292 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 DVL1P1P54792 670 aaPredicted RBP16.22■□□□□ 0.19
UPF1-210ENST00000600689 SLC26A5P58743 744 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 SPEM2Q0P670 501 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 KIR2DS5Q14953 304 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 EIF5AL1Q6IS14 154 aaKnown RBP16.22■□□□□ 0.19
UPF1-210ENST00000600689 FAHD2BQ6P2I3 314 aaPredicted RBP16.22■□□□□ 0.19
UPF1-210ENST00000600689 ZNF565Q8N9K5 539 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 FAHD2AQ96GK7 314 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 HSPB2A8KAH6 182 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 CD5P06127 495 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 ZNF708P17019 499 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 RAB5AP20339 215 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 RBMXP38159 391 aaKnown RBP16.22■□□□□ 0.19
UPF1-210ENST00000600689 CAMLGP49069 296 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 HSPB2Q16082 182 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 C1orf189Q5VU69 101 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 BTNL8Q6UX41 500 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 ZNF600Q6ZNG1 722 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 APCDD1LQ8NCL9 501 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 AQP10Q96PS8 301 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 HDHD3Q9BSH5 251 aaPredicted RBP16.22■□□□□ 0.19
UPF1-210ENST00000600689 RAB18Q9NP72 206 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 FRYLO94915 3013 aa16.21■□□□□ 0.19
UPF1-210ENST00000600689 UMAD1C9J7I0 102 aa16.21■□□□□ 0.19
UPF1-210ENST00000600689 MFNGO00587 321 aa16.21■□□□□ 0.19
UPF1-210ENST00000600689 UBE2CO00762 179 aa16.21■□□□□ 0.19
UPF1-210ENST00000600689 SRSF10O75494 262 aaKnown RBP16.21■□□□□ 0.19
UPF1-210ENST00000600689 GIMD1P0DJR0 217 aa16.21■□□□□ 0.19
UPF1-210ENST00000600689 HIST1H1DP16402 221 aaKnown RBP16.21■□□□□ 0.19
UPF1-210ENST00000600689 LAP3P28838 519 aa16.21■□□□□ 0.19
UPF1-210ENST00000600689 RPS10P46783 165 aaKnown RBP16.21■□□□□ 0.19
UPF1-210ENST00000600689 FBXW4P57775 412 aa16.21■□□□□ 0.19
UPF1-210ENST00000600689 PNLIPRP3Q17RR3 467 aa16.21■□□□□ 0.19
UPF1-210ENST00000600689 TSPO2Q5TGU0 170 aa16.21■□□□□ 0.19
UPF1-210ENST00000600689 OR9K2Q8NGE7 335 aa16.21■□□□□ 0.19
UPF1-210ENST00000600689 PFDN5Q99471 154 aa16.21■□□□□ 0.19
UPF1-210ENST00000600689 MTCH2Q9Y6C9 303 aa16.21■□□□□ 0.19
UPF1-210ENST00000600689 C10orf142B7Z368 130 aa16.21■□□□□ 0.19
UPF1-210ENST00000600689 BPNT1O95861 308 aa16.21■□□□□ 0.19
UPF1-210ENST00000600689 BIDP55957 195 aa16.21■□□□□ 0.19
UPF1-210ENST00000600689 QRFPP83859 136 aa16.21■□□□□ 0.19
UPF1-210ENST00000600689 GUK1Q16774 197 aa16.21■□□□□ 0.19
UPF1-210ENST00000600689 POC1AQ8NBT0 407 aa16.21■□□□□ 0.19
UPF1-210ENST00000600689 SAT2Q96F10 170 aaPredicted RBP16.21■□□□□ 0.19
UPF1-210ENST00000600689 LIN37Q96GY3 246 aaPredicted RBP16.21■□□□□ 0.19
UPF1-210ENST00000600689 SH3BGRL3Q9H299 93 aa16.21■□□□□ 0.19
UPF1-210ENST00000600689 ATXN7O15265 892 aaPredicted RBP16.2■□□□□ 0.18
UPF1-210ENST00000600689 MT-ND4LP03901 98 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 C1QL2Q7Z5L3 287 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 LURAP1LQ8IV03 231 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 DTWD2Q8NBA8 298 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 MRPL24Q96A35 216 aaKnown RBP16.2■□□□□ 0.18
UPF1-210ENST00000600689 PCDH15Q96QU1 1955 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 LOC390937A0A1W2PQ73 354 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 ZNF727A8MUV8 499 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 NUDT19A8MXV4 375 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 TMEM150CB9EJG8 249 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 CDC14BO60729 498 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 BLVRBP30043 206 aaPredicted RBP16.2■□□□□ 0.18
UPF1-210ENST00000600689 GLP1RP43220 463 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 SULT1A2P50226 295 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 TLE3Q04726 772 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 TCTEX1D2Q8WW35 142 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 SLAMF9Q96A28 289 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 KLHDC7BQ96G42 594 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 OR51M1Q9H341 326 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 GPR84Q9NQS5 396 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 ZNF107Q9UII5 783 aaPredicted RBP16.2■□□□□ 0.18
UPF1-210ENST00000600689 CCDC163A0A0D9SF12 145 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 PMS2P1A4D2B8 440 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 C5orf63A6NC05 138 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 A8MVM7 634 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 PTGER4P35408 488 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 ACY1Q03154 408 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 CHRFAM7AQ494W8 412 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 NUP54Q7Z3B4 507 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 GKN2Q86XP6 184 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 ZNF319Q9P2F9 582 aa16.2■□□□□ 0.18
UPF1-210ENST00000600689 IGKV1D-8A0A087WSZ0 117 aa16.19■□□□□ 0.18
UPF1-210ENST00000600689 A0A1W2PPC4 97 aa16.19■□□□□ 0.18
UPF1-210ENST00000600689 HAAOP46952 286 aa16.19■□□□□ 0.18
UPF1-210ENST00000600689 SULT1A1P50225 295 aa16.19■□□□□ 0.18
UPF1-210ENST00000600689 NDUFA6P56556 154 aa16.19■□□□□ 0.18
UPF1-210ENST00000600689 FXYD4P59646 89 aa16.19■□□□□ 0.18
UPF1-210ENST00000600689 NSDHLQ15738 373 aa16.19■□□□□ 0.18
UPF1-210ENST00000600689 AADACL3Q5VUY0 350 aa16.19■□□□□ 0.18
UPF1-210ENST00000600689 LYPD6Q86Y78 171 aa16.19■□□□□ 0.18
UPF1-210ENST00000600689 ARHGEF39Q8N4T4 335 aa16.19■□□□□ 0.18
UPF1-210ENST00000600689 RHOVQ96L33 236 aa16.19■□□□□ 0.18
UPF1-210ENST00000600689 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.19■□□□□ 0.18
UPF1-210ENST00000600689 FAM206AQ9NX38 181 aa16.19■□□□□ 0.18
UPF1-210ENST00000600689 KPTNQ9Y664 436 aa16.19■□□□□ 0.18
UPF1-210ENST00000600689 GABRR1P24046 479 aa16.19■□□□□ 0.18
UPF1-210ENST00000600689 POLR2HP52434 150 aaKnown RBP16.19■□□□□ 0.18
UPF1-210ENST00000600689 HSD17B7P56937 341 aa16.19■□□□□ 0.18
UPF1-210ENST00000600689 FOXK1P85037 733 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms