RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 CDIPTO14735 213 aa16.87■□□□□ 0.29
CLK3-225ENST00000569063 ADAM20O43506 726 aa16.87■□□□□ 0.29
CLK3-225ENST00000569063 SRSF10O75494 262 aaKnown RBP16.87■□□□□ 0.29
CLK3-225ENST00000569063 GYPAP02724 150 aa16.87■□□□□ 0.29
CLK3-225ENST00000569063 ATP6V1B1P15313 513 aa16.87■□□□□ 0.29
CLK3-225ENST00000569063 EGR3Q06889 387 aa16.87■□□□□ 0.29
CLK3-225ENST00000569063 KPNB1Q14974 876 aaKnown RBP16.87■□□□□ 0.29
CLK3-225ENST00000569063 ZNF322Q6U7Q0 402 aaPredicted RBP16.87■□□□□ 0.29
CLK3-225ENST00000569063 FAM216AQ8WUB2 273 aa16.87■□□□□ 0.29
CLK3-225ENST00000569063 HPSE2Q8WWQ2 592 aa16.87■□□□□ 0.29
CLK3-225ENST00000569063 TECTBQ96PL2 329 aa16.87■□□□□ 0.29
CLK3-225ENST00000569063 TTTY10Q9BZA0 68 aa16.87■□□□□ 0.29
CLK3-225ENST00000569063 RIBC2Q9H4K1 309 aa16.87■□□□□ 0.29
CLK3-225ENST00000569063 KAAG1Q9UBP8 84 aa16.87■□□□□ 0.29
CLK3-225ENST00000569063 ZNF69Q9UC07 566 aa16.87■□□□□ 0.29
CLK3-225ENST00000569063 WARS2Q9UGM6 360 aaKnown RBP16.87■□□□□ 0.29
CLK3-225ENST00000569063 ZNF816-ZNF321PA0A0X1KG74 233 aa16.86■□□□□ 0.29
CLK3-225ENST00000569063 C22orf46C9J442 243 aa16.86■□□□□ 0.29
CLK3-225ENST00000569063 ZNF670-ZNF695F2Z2N8 137 aa16.86■□□□□ 0.29
CLK3-225ENST00000569063 H3BNX3 289 aa16.86■□□□□ 0.29
CLK3-225ENST00000569063 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP16.86■□□□□ 0.29
CLK3-225ENST00000569063 TRIM77I1YAP6 450 aa16.86■□□□□ 0.29
CLK3-225ENST00000569063 ENSAO43768 121 aaKnown RBP16.86■□□□□ 0.29
CLK3-225ENST00000569063 MFGE8Q08431 387 aaPredicted RBP16.86■□□□□ 0.29
CLK3-225ENST00000569063 MICBQ29980 383 aa16.86■□□□□ 0.29
CLK3-225ENST00000569063 C11orf91Q3C1V1 193 aa16.86■□□□□ 0.29
CLK3-225ENST00000569063 ZFP1Q6P2D0 407 aa16.86■□□□□ 0.29
CLK3-225ENST00000569063 ZDHHC23Q8IYP9 409 aa16.86■□□□□ 0.29
CLK3-225ENST00000569063 OR8J1Q8NGP2 316 aa16.86■□□□□ 0.29
CLK3-225ENST00000569063 FAM81AQ8TBF8 368 aa16.86■□□□□ 0.29
CLK3-225ENST00000569063 OR51E1Q8TCB6 317 aa16.86■□□□□ 0.29
CLK3-225ENST00000569063 C12orf43Q96C57 262 aaKnown RBP16.86■□□□□ 0.29
CLK3-225ENST00000569063 RNF170Q96K19 258 aa16.86■□□□□ 0.29
CLK3-225ENST00000569063 APOL4Q9BPW4 351 aa16.86■□□□□ 0.29
CLK3-225ENST00000569063 FGF23Q9GZV9 251 aaPredicted RBP16.86■□□□□ 0.29
CLK3-225ENST00000569063 IGHV3OR15-7A0A075B7D8 119 aa16.85■□□□□ 0.29
CLK3-225ENST00000569063 LIPFP07098 398 aa16.85■□□□□ 0.29
CLK3-225ENST00000569063 HTR1FP30939 366 aa16.85■□□□□ 0.29
CLK3-225ENST00000569063 POU4F2Q12837 409 aa16.85■□□□□ 0.29
CLK3-225ENST00000569063 ZBTB37Q5TC79 503 aa16.85■□□□□ 0.29
CLK3-225ENST00000569063 ZDHHC22Q8N966 263 aa16.85■□□□□ 0.29
CLK3-225ENST00000569063 OR51G2Q8NGK0 314 aa16.85■□□□□ 0.29
CLK3-225ENST00000569063 OR10Z1Q8NGY1 313 aa16.85■□□□□ 0.29
CLK3-225ENST00000569063 PPP1R14AQ96A00 147 aa16.85■□□□□ 0.29
CLK3-225ENST00000569063 HIST1H2AAQ96QV6 131 aa16.85■□□□□ 0.29
CLK3-225ENST00000569063 MOB1AQ9H8S9 216 aa16.85■□□□□ 0.29
CLK3-225ENST00000569063 SMURF1Q9HCE7 757 aa16.85■□□□□ 0.29
CLK3-225ENST00000569063 ESM1Q9NQ30 184 aa16.85■□□□□ 0.29
CLK3-225ENST00000569063 GPR84Q9NQS5 396 aa16.85■□□□□ 0.29
CLK3-225ENST00000569063 R4GMQ9 66 aa16.85■□□□□ 0.29
CLK3-225ENST00000569063 STAB1Q9NY15 2570 aa16.85■□□□□ 0.29
CLK3-225ENST00000569063 DOCK11Q5JSL3 2073 aa16.84■□□□□ 0.29
CLK3-225ENST00000569063 SRRM5B3KS81 715 aa16.84■□□□□ 0.29
CLK3-225ENST00000569063 TMPRSS2O15393 492 aa16.84■□□□□ 0.29
CLK3-225ENST00000569063 MAGEB4O15481 346 aaPredicted RBP16.84■□□□□ 0.29
CLK3-225ENST00000569063 FCN3O75636 299 aa16.84■□□□□ 0.29
CLK3-225ENST00000569063 PLATP00750 562 aa16.84■□□□□ 0.29
CLK3-225ENST00000569063 TTRP02766 147 aa16.84■□□□□ 0.29
CLK3-225ENST00000569063 ALPLP05186 524 aa16.84■□□□□ 0.29
CLK3-225ENST00000569063 IGHV4-38-2P0DP08 117 aa16.84■□□□□ 0.29
CLK3-225ENST00000569063 RIPPLY1Q0D2K3 151 aa16.84■□□□□ 0.29
CLK3-225ENST00000569063 TMED1Q13445 227 aa16.84■□□□□ 0.29
CLK3-225ENST00000569063 CEACAM21Q3KPI0 293 aa16.84■□□□□ 0.29
CLK3-225ENST00000569063 C9orf139Q6ZV77 190 aa16.84■□□□□ 0.29
CLK3-225ENST00000569063 DOK3Q7L591 496 aa16.84■□□□□ 0.29
CLK3-225ENST00000569063 COMMD2Q86X83 199 aa16.84■□□□□ 0.29
CLK3-225ENST00000569063 BCL6BQ8N143 479 aaPredicted RBP16.84■□□□□ 0.29
CLK3-225ENST00000569063 SCCPDHQ8NBX0 429 aa16.84■□□□□ 0.29
CLK3-225ENST00000569063 RPL3LQ92901 407 aaKnown RBP16.84■□□□□ 0.29
CLK3-225ENST00000569063 FAM71F1Q96KD3 344 aaPredicted RBP16.84■□□□□ 0.29
CLK3-225ENST00000569063 RASSF4Q9H2L5 321 aa16.84■□□□□ 0.29
CLK3-225ENST00000569063 USE1Q9NZ43 259 aa16.84■□□□□ 0.29
CLK3-225ENST00000569063 MRM2Q9UI43 246 aaKnown RBP16.84■□□□□ 0.29
CLK3-225ENST00000569063 LOC110117498-PIK3R3F6TDL0 507 aa16.83■□□□□ 0.28
CLK3-225ENST00000569063 DVL1O14640 695 aa16.83■□□□□ 0.28
CLK3-225ENST00000569063 MTRF1O75570 445 aaKnown RBP16.83■□□□□ 0.28
CLK3-225ENST00000569063 OR2T7P0C7T2 308 aa16.83■□□□□ 0.28
CLK3-225ENST00000569063 CDC42P60953 191 aa16.83■□□□□ 0.28
CLK3-225ENST00000569063 FGF12P61328 243 aa16.83■□□□□ 0.28
CLK3-225ENST00000569063 RBMS3Q6XE24 437 aaKnown RBP16.83■□□□□ 0.28
CLK3-225ENST00000569063 KCTD8Q6ZWB6 473 aa16.83■□□□□ 0.28
CLK3-225ENST00000569063 THAP5Q7Z6K1 395 aa16.83■□□□□ 0.28
CLK3-225ENST00000569063 C10orf67Q8IYJ2 551 aa16.83■□□□□ 0.28
CLK3-225ENST00000569063 ELMOD2Q8IZ81 293 aa16.83■□□□□ 0.28
CLK3-225ENST00000569063 SIGLECL1Q8N7X8 197 aa16.83■□□□□ 0.28
CLK3-225ENST00000569063 OR5A2Q8NGI9 324 aa16.83■□□□□ 0.28
CLK3-225ENST00000569063 OR2T27Q8NH04 317 aa16.83■□□□□ 0.28
CLK3-225ENST00000569063 TRUB1Q8WWH5 349 aaKnown RBP16.83■□□□□ 0.28
CLK3-225ENST00000569063 EME1Q96AY2 570 aa16.83■□□□□ 0.28
CLK3-225ENST00000569063 MS4A7Q9GZW8 240 aaPredicted RBP16.83■□□□□ 0.28
CLK3-225ENST00000569063 SNX5Q9Y5X3 404 aa16.83■□□□□ 0.28
CLK3-225ENST00000569063 DHRS3O75911 302 aa16.82■□□□□ 0.28
CLK3-225ENST00000569063 ECDO95905 644 aaPredicted RBP16.82■□□□□ 0.28
CLK3-225ENST00000569063 GPM6AP51674 278 aa16.82■□□□□ 0.28
CLK3-225ENST00000569063 GNG3P63215 75 aa16.82■□□□□ 0.28
CLK3-225ENST00000569063 WDR38Q5JTN6 314 aa16.82■□□□□ 0.28
CLK3-225ENST00000569063 BCL2L15Q5TBC7 163 aa16.82■□□□□ 0.28
CLK3-225ENST00000569063 ATPAF1Q5TC12 328 aaPredicted RBP16.82■□□□□ 0.28
CLK3-225ENST00000569063 Q6ZSR3 168 aa16.82■□□□□ 0.28
CLK3-225ENST00000569063 SSX6Q7RTT6 188 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms