RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 SLC36A2Q495M3 483 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 CCSMST1Q4G0I0 132 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 ACSM3Q53FZ2 586 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 ARL13AQ5H913 290 aaPredicted RBP2.85□□□□□ -1.95
VPS35-208ENST00000568612 TFDP3Q5H9I0 405 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 GCSAMLQ5JQS6 135 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 TPTE2P1Q5T6R2 138 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 GFI1BQ5VTD9 330 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 SDHAF4Q5VUM1 108 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 TMEM268Q5VZI3 342 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 WDR82Q6UXN9 313 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 ASCL4Q6XD76 172 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 TMEM91Q6ZNR0 172 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 ACOT7LQ6ZUV0 252 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 ADCK2Q7Z695 626 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 LAS2Q8IYD9 372 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 OR4N4Q8N0Y3 316 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 LGI3Q8N145 548 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 KCNRGQ8N5I3 272 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 C2orf73Q8N5S3 287 aaPredicted RBP2.85□□□□□ -1.95
VPS35-208ENST00000568612 HORMAD2Q8N7B1 307 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 GATSQ8NAP1 163 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 OR1J1Q8NGS3 322 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 OR51Q1Q8NH59 317 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 ZNF519Q8TB69 540 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 SLC2A12Q8TD20 617 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 TMEM239Q8WW34 195 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 SPRYD4Q8WW59 207 aaPredicted RBP2.85□□□□□ -1.95
VPS35-208ENST00000568612 PTH2Q96A98 100 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 MOB3AQ96BX8 217 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 THOC3Q96J01 351 aaKnown RBP2.85□□□□□ -1.95
VPS35-208ENST00000568612 C12orf42Q96LP6 360 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 CCDC115Q96NT0 180 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 OR5B12Q96R08 314 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 ATOH8Q96SQ7 321 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 RHNO1Q9BSD3 238 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 NUDT9Q9BW91 350 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 CDCA4Q9BXL8 241 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 FXYD6Q9H0Q3 95 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 BOLA2Q9H3K6 86 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 RBKSQ9H477 322 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 ALG9Q9H6U8 611 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 ELL3Q9HB65 397 aaPredicted RBP2.85□□□□□ -1.95
VPS35-208ENST00000568612 LTB4R2Q9NPC1 389 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 MYOZ2Q9NPC6 264 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 HEBP1Q9NRV9 189 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 LYRM2Q9NU23 88 aaPredicted RBP2.85□□□□□ -1.95
VPS35-208ENST00000568612 GPATCH2LQ9NWQ4 482 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 NDUFB11Q9NX14 153 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 TAS2R14Q9NYV8 317 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 P2RX2Q9UBL9 471 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 CLN8Q9UBY8 286 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 PLEKHB1Q9UF11 243 aaPredicted RBP2.85□□□□□ -1.95
VPS35-208ENST00000568612 SS18L2Q9UHA2 77 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 CRLS1Q9UJA2 301 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 ERRFI1Q9UJM3 462 aaPredicted RBP2.85□□□□□ -1.95
VPS35-208ENST00000568612 FBXO4Q9UKT5 387 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 FLVCR2Q9UPI3 526 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 PSG8Q9UQ74 426 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 C14orf166Q9Y224 244 aaKnown RBP2.85□□□□□ -1.95
VPS35-208ENST00000568612 RCE1Q9Y256 329 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 TSSC4Q9Y5U2 329 aaPredicted RBP2.85□□□□□ -1.95
VPS35-208ENST00000568612 RFNGQ9Y644 331 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 ENPP4Q9Y6X5 453 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 NRXN3Q9Y4C0 1643 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 ADAMTS7Q9UKP4 1686 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 A0A0G2JMZ2 1700 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 LRRC37A2A6NM11 1700 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 LRRC37AA6NMS7 1700 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 WDR90Q96KV7 1748 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 TRIP11Q15643 1979 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP2.84□□□□□ -1.95
VPS35-208ENST00000568612 LY6G6EA0A0G2JKS1 128 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 IGLV5-39A0A0G2JS06 123 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 C11orf97A0A1B0GVM6 126 aaPredicted RBP2.84□□□□□ -1.95
VPS35-208ENST00000568612 C17orf102A2RUQ5 167 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 C7orf77A4D0Y5 90 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 TMEM150BA6NC51 233 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 TMEM235A6NFC5 223 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 GGT3PA6NGU5 568 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 NPIPB15A6NHN6 443 aaPredicted RBP2.84□□□□□ -1.95
VPS35-208ENST00000568612 ZNF705GA8MUZ8 300 aaPredicted RBP2.84□□□□□ -1.95
VPS35-208ENST00000568612 B4DGG1 531 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 ZNF814B7Z6K7 855 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 F5H5P2 479 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 G3V3Y1 287 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 SDHDO14521 159 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 TNFRSF13BO14836 293 aaPredicted RBP2.84□□□□□ -1.95
VPS35-208ENST00000568612 ARPC1BO15143 372 aaKnown RBP2.84□□□□□ -1.95
VPS35-208ENST00000568612 HCRTR1O43613 425 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 DUX1O43812 170 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 LANCL1O43813 399 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 TPST2O60704 377 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 LRP3O75074 770 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 CSO75390 466 aaKnown RBP2.84□□□□□ -1.95
VPS35-208ENST00000568612 SCGNO76038 276 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 GLSO94925 669 aaPredicted RBP2.84□□□□□ -1.95
VPS35-208ENST00000568612 OR2F2O95006 317 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 NTN1O95631 604 aa2.84□□□□□ -1.95
VPS35-208ENST00000568612 DDAH2O95865 285 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms