RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 PCDHGA1Q9Y5H4 931 aa11.71□□□□□ -0.53
VPS4A-204ENST00000566354 FREM2Q5SZK8 3169 aa11.71□□□□□ -0.53
VPS4A-204ENST00000566354 LOC101059948A0A1B0GTJ6 334 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 SPAARA0A1B0GVQ0 90 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 OR6C76A6NM76 312 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 NUDT19A8MXV4 375 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 H7C2Y5 167 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 SYT7O43581 403 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 TTRP02766 147 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 S100A9P06702 114 aaKnown RBP11.71□□□□□ -0.54
VPS4A-204ENST00000566354 CHRM2P08172 466 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 PGAM2P15259 253 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 GNB3P16520 340 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 PNLIPRP3Q17RR3 467 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 LBHQ53QV2 105 aaPredicted RBP11.71□□□□□ -0.54
VPS4A-204ENST00000566354 FAM69BQ5VUD6 431 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 ASCL5Q7RTU5 278 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 HOGA1Q86XE5 327 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 MISPQ8IVT2 679 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 ARMC10Q8N2F6 343 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 ZNF441Q8N8Z8 693 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 SLC30A7Q8NEW0 376 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 MFSD8Q8NHS3 518 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 RELTQ969Z4 430 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 SELENOIQ9C0D9 397 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 TGIF2Q9GZN2 237 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 CRLF2Q9HC73 371 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 TMEM100Q9NV29 134 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 PISDQ9UG56 409 aa11.71□□□□□ -0.54
VPS4A-204ENST00000566354 C13orf42A0A1B0GVH6 325 aa11.7□□□□□ -0.54
VPS4A-204ENST00000566354 FBP1P09467 338 aa11.7□□□□□ -0.54
VPS4A-204ENST00000566354 IL11P20809 199 aa11.7□□□□□ -0.54
VPS4A-204ENST00000566354 SERPINF1P36955 418 aa11.7□□□□□ -0.54
VPS4A-204ENST00000566354 BAP18Q8IXM2 172 aa11.7□□□□□ -0.54
VPS4A-204ENST00000566354 BOLLQ8N9W6 283 aaKnown RBP11.7□□□□□ -0.54
VPS4A-204ENST00000566354 OR4K15Q8NH41 348 aa11.7□□□□□ -0.54
VPS4A-204ENST00000566354 RNF141Q8WVD5 230 aa11.7□□□□□ -0.54
VPS4A-204ENST00000566354 CPNE4Q96A23 557 aaPredicted RBP11.7□□□□□ -0.54
VPS4A-204ENST00000566354 ADAT3Q96EY9 351 aaPredicted RBP11.7□□□□□ -0.54
VPS4A-204ENST00000566354 PTGES2Q9H7Z7 377 aa11.7□□□□□ -0.54
VPS4A-204ENST00000566354 CSAG2Q9Y5P2 127 aa11.7□□□□□ -0.54
VPS4A-204ENST00000566354 TMEM14DPA8MWL7 114 aa11.7□□□□□ -0.54
VPS4A-204ENST00000566354 GLAP06280 429 aa11.7□□□□□ -0.54
VPS4A-204ENST00000566354 CD79AP11912 226 aa11.7□□□□□ -0.54
VPS4A-204ENST00000566354 TMEM128Q5BJH2 165 aa11.7□□□□□ -0.54
VPS4A-204ENST00000566354 ZNF529Q6P280 563 aa11.7□□□□□ -0.54
VPS4A-204ENST00000566354 ANGPTL5Q86XS5 388 aa11.7□□□□□ -0.54
VPS4A-204ENST00000566354 PUSL1Q8N0Z8 303 aaKnown RBP11.7□□□□□ -0.54
VPS4A-204ENST00000566354 OR10H5Q8NGA6 315 aa11.7□□□□□ -0.54
VPS4A-204ENST00000566354 TERB2Q8NHR7 220 aa11.7□□□□□ -0.54
VPS4A-204ENST00000566354 MARCH1Q8TCQ1 289 aa11.7□□□□□ -0.54
VPS4A-204ENST00000566354 ST8SIA1Q92185 356 aa11.7□□□□□ -0.54
VPS4A-204ENST00000566354 DCUN1D4Q92564 292 aa11.7□□□□□ -0.54
VPS4A-204ENST00000566354 SLAMF6Q96DU3 332 aa11.7□□□□□ -0.54
VPS4A-204ENST00000566354 PAPOLGQ9BWT3 736 aaKnown RBP11.7□□□□□ -0.54
VPS4A-204ENST00000566354 PBOV1Q9GZY1 135 aa11.7□□□□□ -0.54
VPS4A-204ENST00000566354 FN3KRPQ9HA64 309 aa11.7□□□□□ -0.54
VPS4A-204ENST00000566354 CHTOPQ9Y3Y2 248 aaKnown RBP11.7□□□□□ -0.54
VPS4A-204ENST00000566354 CELSR3Q9NYQ7 3312 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 IGKV1D-43A0A0B4J1Z2 117 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 IGHV3-20A0A0C4DH32 117 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 ONECUT2O95948 504 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 PMP2P02689 132 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 JMJD7P0C870 316 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 ZNF93P35789 620 aaPredicted RBP11.69□□□□□ -0.54
VPS4A-204ENST00000566354 HSF1Q00613 529 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 POU3F1Q03052 451 aaPredicted RBP11.69□□□□□ -0.54
VPS4A-204ENST00000566354 AIMP2Q13155 320 aaKnown RBP11.69□□□□□ -0.54
VPS4A-204ENST00000566354 OR7A5Q15622 319 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 DCAF12Q5T6F0 453 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 AWAT2Q6E213 333 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 ARL11Q969Q4 196 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 LIN37Q96GY3 246 aaPredicted RBP11.69□□□□□ -0.54
VPS4A-204ENST00000566354 SPSB2Q99619 263 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 RNF126Q9BV68 326 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 ZNF629Q9UEG4 869 aaPredicted RBP11.69□□□□□ -0.54
VPS4A-204ENST00000566354 VSTM2BA6NLU5 285 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 GPR31O00270 319 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 TERTO14746 1132 aaKnown RBP11.69□□□□□ -0.54
VPS4A-204ENST00000566354 IGHV2-70P01814 119 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 GSTP1P09211 210 aaKnown RBP11.69□□□□□ -0.54
VPS4A-204ENST00000566354 APOBEC1P41238 236 aaKnown RBP11.69□□□□□ -0.54
VPS4A-204ENST00000566354 EMP2P54851 167 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 TLE3Q04726 772 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 CHAF1BQ13112 559 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 C10orf91Q5T1B1 145 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 MRPL14Q6P1L8 145 aaKnown RBP11.69□□□□□ -0.54
VPS4A-204ENST00000566354 PLPP5Q8NEB5 264 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 OR13C9Q8NGT0 318 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 C11orf40Q8WZ69 217 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 MR1Q95460 341 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 CHST11Q9NPF2 352 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 SDK2Q58EX2 2172 aa11.69□□□□□ -0.54
VPS4A-204ENST00000566354 ANKUB1A6NFN9 424 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 CEACAM18A8MTB9 384 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 ADAM10O14672 748 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 KLK3P07288 261 aaPredicted RBP11.68□□□□□ -0.54
VPS4A-204ENST00000566354 FTH1P19P0C7X4 201 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 ACTBL2Q562R1 376 aa11.68□□□□□ -0.54
VPS4A-204ENST00000566354 VAX1Q5SQQ9 334 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms