RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 CD200P41217 278 aa14.57□□□□□ -0.08
CLN3-217ENST00000565354 PRDX4Q13162 271 aa14.57□□□□□ -0.08
CLN3-217ENST00000565354 SPRNQ5BIV9 151 aa14.57□□□□□ -0.08
CLN3-217ENST00000565354 C6orf141Q5SZD1 244 aa14.57□□□□□ -0.08
CLN3-217ENST00000565354 MOGAT3Q86VF5 341 aa14.57□□□□□ -0.08
CLN3-217ENST00000565354 EGFL6Q8IUX8 553 aa14.57□□□□□ -0.08
CLN3-217ENST00000565354 OR2G2Q8NGZ5 317 aa14.57□□□□□ -0.08
CLN3-217ENST00000565354 HAVCR2Q8TDQ0 301 aa14.57□□□□□ -0.08
CLN3-217ENST00000565354 RAB1CQ92928 201 aa14.57□□□□□ -0.08
CLN3-217ENST00000565354 PELI1Q96FA3 418 aa14.57□□□□□ -0.08
CLN3-217ENST00000565354 MICU1Q9BPX6 476 aa14.57□□□□□ -0.08
CLN3-217ENST00000565354 JAM3Q9BX67 310 aa14.57□□□□□ -0.08
CLN3-217ENST00000565354 ISG20L2Q9H9L3 353 aaKnown RBP14.57□□□□□ -0.08
CLN3-217ENST00000565354 PLCXD1Q9NUJ7 323 aa14.57□□□□□ -0.08
CLN3-217ENST00000565354 PSORS1C1Q9UIG5 152 aa14.57□□□□□ -0.08
CLN3-217ENST00000565354 ENPP5Q9UJA9 477 aa14.57□□□□□ -0.08
CLN3-217ENST00000565354 PIGLQ9Y2B2 252 aa14.57□□□□□ -0.08
CLN3-217ENST00000565354 CAB39Q9Y376 341 aaPredicted RBP14.57□□□□□ -0.08
CLN3-217ENST00000565354 RHBDD3Q9Y3P4 386 aa14.57□□□□□ -0.08
CLN3-217ENST00000565354 MPC1Q9Y5U8 109 aa14.57□□□□□ -0.08
CLN3-217ENST00000565354 CACNG2Q9Y698 323 aa14.57□□□□□ -0.08
CLN3-217ENST00000565354 A6NLC8 198 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 ZNF850A8MQ14 1090 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 H3BSH0 61 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 IFNL4K9M1U5 179 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 SLC1A7O00341 560 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 RP2O75695 350 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 IGLV3-1P01715 115 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 LIMS3P0CW19 117 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 LIMS4P0CW20 117 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 ETV1P50549 477 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 MVKQ03426 396 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 RIN1Q13671 783 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 ALKBH1Q13686 389 aaKnown RBP14.56□□□□□ -0.08
CLN3-217ENST00000565354 TMEM244Q5VVB8 128 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 PRAMEF6Q5VXH4 476 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 KCTD8Q6ZWB6 473 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 ZDHHC23Q8IYP9 409 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 PRSS35Q8N3Z0 413 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 CELF2-AS1Q8N7Q2 184 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 ZNF676Q8N7Q3 588 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 CCDC54Q8NEL0 328 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 OR11L1Q8NGX0 322 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 MYDGFQ969H8 173 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 ZNF184Q99676 751 aaPredicted RBP14.56□□□□□ -0.08
CLN3-217ENST00000565354 RTL8AQ9BWD3 113 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 TMEM106BQ9NUM4 274 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 UFSP2Q9NUQ7 469 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 TPRKBQ9Y3C4 175 aa14.56□□□□□ -0.08
CLN3-217ENST00000565354 A0A1B0GWJ7 208 aa14.55□□□□□ -0.08
CLN3-217ENST00000565354 ISPDA4D126 451 aa14.55□□□□□ -0.08
CLN3-217ENST00000565354 LRRC30A6NM36 301 aa14.55□□□□□ -0.08
CLN3-217ENST00000565354 VWC2LB2RUY7 222 aa14.55□□□□□ -0.08
CLN3-217ENST00000565354 PTGES3LE9PB15 166 aa14.55□□□□□ -0.08
CLN3-217ENST00000565354 MYL12BO14950 172 aa14.55□□□□□ -0.08
CLN3-217ENST00000565354 CST4P01036 141 aa14.55□□□□□ -0.08
CLN3-217ENST00000565354 GRPP07492 148 aa14.55□□□□□ -0.08
CLN3-217ENST00000565354 CCDC159P0C7I6 412 aa14.55□□□□□ -0.08
CLN3-217ENST00000565354 ZNF12P17014 697 aa14.55□□□□□ -0.08
CLN3-217ENST00000565354 KIR3DL2P43630 455 aa14.55□□□□□ -0.08
CLN3-217ENST00000565354 CHN2P52757 468 aa14.55□□□□□ -0.08
CLN3-217ENST00000565354 MAB21L1Q13394 359 aa14.55□□□□□ -0.08
CLN3-217ENST00000565354 AVPI1Q5T686 147 aa14.55□□□□□ -0.08
CLN3-217ENST00000565354 ZBTB37Q5TC79 503 aa14.55□□□□□ -0.08
CLN3-217ENST00000565354 LAIR2Q6ISS4 152 aa14.55□□□□□ -0.08
CLN3-217ENST00000565354 IL17RELQ6ZVW7 336 aa14.55□□□□□ -0.08
CLN3-217ENST00000565354 MOB3CQ70IA8 216 aa14.55□□□□□ -0.08
CLN3-217ENST00000565354 ZNF420Q8TAQ5 688 aaPredicted RBP14.55□□□□□ -0.08
CLN3-217ENST00000565354 HPS1Q92902 700 aa14.55□□□□□ -0.08
CLN3-217ENST00000565354 ERGIC1Q969X5 290 aa14.55□□□□□ -0.08
CLN3-217ENST00000565354 COMMD4Q9H0A8 199 aa14.55□□□□□ -0.08
CLN3-217ENST00000565354 NARFLQ9H6Q4 476 aa14.55□□□□□ -0.08
CLN3-217ENST00000565354 FN3KRPQ9HA64 309 aa14.55□□□□□ -0.08
CLN3-217ENST00000565354 GCM1Q9NP62 436 aa14.55□□□□□ -0.08
CLN3-217ENST00000565354 A0A1B0GTI1 187 aa14.54□□□□□ -0.08
CLN3-217ENST00000565354 LOC107986453A0A1B0GWG9 222 aa14.54□□□□□ -0.08
CLN3-217ENST00000565354 FAHP16930 419 aa14.54□□□□□ -0.08
CLN3-217ENST00000565354 GZMKP49863 264 aa14.54□□□□□ -0.08
CLN3-217ENST00000565354 CCR9P51686 369 aa14.54□□□□□ -0.08
CLN3-217ENST00000565354 CDH15P55291 814 aa14.54□□□□□ -0.08
CLN3-217ENST00000565354 FAM120AOSQ5T036 256 aa14.54□□□□□ -0.08
CLN3-217ENST00000565354 OR2G6Q5TZ20 316 aa14.54□□□□□ -0.08
CLN3-217ENST00000565354 PLCXD3Q63HM9 321 aa14.54□□□□□ -0.08
CLN3-217ENST00000565354 FAM166AQ6J272 317 aa14.54□□□□□ -0.08
CLN3-217ENST00000565354 FDX2Q6P4F2 183 aa14.54□□□□□ -0.08
CLN3-217ENST00000565354 C1orf87Q8N0U7 546 aa14.54□□□□□ -0.08
CLN3-217ENST00000565354 OR14K1Q8NGZ2 314 aa14.54□□□□□ -0.08
CLN3-217ENST00000565354 ZNF649Q9BS31 505 aa14.54□□□□□ -0.08
CLN3-217ENST00000565354 FRRS1LQ9P0K9 344 aa14.54□□□□□ -0.08
CLN3-217ENST00000565354 CLEC2DQ9UHP7 191 aa14.54□□□□□ -0.08
CLN3-217ENST00000565354 KCNS2Q9ULS6 477 aa14.54□□□□□ -0.08
CLN3-217ENST00000565354 V9GYS6 101 aa14.54□□□□□ -0.08
CLN3-217ENST00000565354 DYSFO75923 2080 aa14.54□□□□□ -0.08
CLN3-217ENST00000565354 TRBV2A0A0J9YWF9 115 aa14.53□□□□□ -0.08
CLN3-217ENST00000565354 hCG_1807616A0A1W2PRN6 198 aa14.53□□□□□ -0.08
CLN3-217ENST00000565354 DHRS7CA6NNS2 312 aa14.53□□□□□ -0.08
CLN3-217ENST00000565354 NRASP01111 189 aa14.53□□□□□ -0.08
CLN3-217ENST00000565354 CCL1P22362 96 aa14.53□□□□□ -0.08
CLN3-217ENST00000565354 GATA4P43694 442 aa14.53□□□□□ -0.08
CLN3-217ENST00000565354 NANOS3P60323 173 aaKnown RBP14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms