RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 TEX261Q6UWH6 196 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 C3P1Q6ZMU1 363 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 ZNF546Q86UE3 836 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 MYPOPQ86VE0 399 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-215ENST00000552823 GTPBP8Q8N3Z3 284 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-215ENST00000552823 OR5M9Q8NGP3 310 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 OR10R2Q8NGX6 335 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 OR6X1Q8NH79 312 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 LYZL4Q96KX0 146 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 ZNF488Q96MN9 340 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 ZNF75AQ96N20 296 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 UPB1Q9UBR1 384 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 KCNN3Q9UGI6 736 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 RAB22AQ9UL26 194 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 NOSIPQ9Y314 301 aaKnown RBP4.91□□□□□ -1.62
LIMA1-215ENST00000552823 HDGFL3Q9Y3E1 203 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 U3KQ87 197 aa4.91□□□□□ -1.62
LIMA1-215ENST00000552823 WNK2Q9Y3S1 2297 aa4.9□□□□□ -1.62
LIMA1-215ENST00000552823 A0A1W2PNU3 283 aaPredicted RBP4.9□□□□□ -1.62
LIMA1-215ENST00000552823 NAP1L6A6NFF2 107 aa4.9□□□□□ -1.62
LIMA1-215ENST00000552823 ZNF850A8MQ14 1090 aa4.9□□□□□ -1.62
LIMA1-215ENST00000552823 MPTX1A8MV57 137 aa4.9□□□□□ -1.62
LIMA1-215ENST00000552823 OR7C1O76099 320 aaPredicted RBP4.9□□□□□ -1.62
LIMA1-215ENST00000552823 ALX3O95076 343 aa4.9□□□□□ -1.62
LIMA1-215ENST00000552823 MT-CO3P00414 261 aa4.9□□□□□ -1.62
LIMA1-215ENST00000552823 NAGAP17050 411 aa4.9□□□□□ -1.62
LIMA1-215ENST00000552823 PTGS2P35354 604 aa4.9□□□□□ -1.62
LIMA1-215ENST00000552823 P2RY4P51582 365 aa4.9□□□□□ -1.62
LIMA1-215ENST00000552823 ARF1P84077 181 aaKnown RBP4.9□□□□□ -1.62
LIMA1-215ENST00000552823 ZFP36L1Q07352 338 aaKnown RBP4.9□□□□□ -1.62
LIMA1-215ENST00000552823 ZP4Q12836 540 aa4.9□□□□□ -1.62
LIMA1-215ENST00000552823 ENDOGQ14249 297 aaKnown RBP4.9□□□□□ -1.62
LIMA1-215ENST00000552823 OR1C1Q15619 314 aa4.9□□□□□ -1.62
LIMA1-215ENST00000552823 PIGYQ3MUY2 71 aa4.9□□□□□ -1.62
LIMA1-215ENST00000552823 FAM180AQ6UWF9 173 aa4.9□□□□□ -1.62
LIMA1-215ENST00000552823 OR13C8Q8NGS7 320 aa4.9□□□□□ -1.62
LIMA1-215ENST00000552823 SGK3Q96BR1 496 aa4.9□□□□□ -1.62
LIMA1-215ENST00000552823 BORCS8Q96FH0 119 aa4.9□□□□□ -1.62
LIMA1-215ENST00000552823 C7orf50Q9BRJ6 194 aaKnown RBP4.9□□□□□ -1.62
LIMA1-215ENST00000552823 EDEM2Q9BV94 578 aa4.9□□□□□ -1.62
LIMA1-215ENST00000552823 MS4A7Q9GZW8 240 aaPredicted RBP4.9□□□□□ -1.62
LIMA1-215ENST00000552823 LPAR5Q9H1C0 372 aa4.9□□□□□ -1.62
LIMA1-215ENST00000552823 ESRP2Q9H6T0 727 aaKnown RBP4.9□□□□□ -1.62
LIMA1-215ENST00000552823 NXT1Q9UKK6 140 aaKnown RBP4.9□□□□□ -1.62
LIMA1-215ENST00000552823 ATMQ13315 3056 aa4.9□□□□□ -1.62
LIMA1-215ENST00000552823 ARFGEF3Q5TH69 2177 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 IGKV1D-8A0A087WSZ0 117 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 TEX13DA0A0J9YY54 714 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-215ENST00000552823 A0A1B0GUH1 482 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 C5orf49A4QMS7 147 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 F5H0A9 414 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-215ENST00000552823 RGS13O14921 159 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 AGPAT2O15120 278 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 NKX2-8O15522 239 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 TNFSF12O43508 249 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 SP9P0CG40 484 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 ASCL1P50553 236 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 NOVA1P51513 510 aaKnown RBP4.9□□□□□ -1.63
LIMA1-215ENST00000552823 SUMO3P55854 103 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-215ENST00000552823 ARPC4P59998 168 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 RAC1P63000 192 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 HGFACQ04756 655 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 HNF4GQ14541 408 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 MICBQ29980 383 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 CHRFAM7AQ494W8 412 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 PABPC1L2AQ5JQF8 200 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 ELFN2Q5R3F8 820 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 ZBTB37Q5TC79 503 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 PLCXD3Q63HM9 321 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 ZNF626Q68DY1 528 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 C5orf46Q6UWT4 87 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 TMUB2Q71RG4 321 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 SKA3Q8IX90 412 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 ZNF100Q8IYN0 542 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 CARFQ8N187 725 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 ZIC4Q8N9L1 334 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 OR5H2Q8NGV7 314 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 LRRC20Q8TCA0 184 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 WNT2BQ93097 391 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 REEP6Q96HR9 211 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 UTP23Q9BRU9 249 aaKnown RBP4.9□□□□□ -1.63
LIMA1-215ENST00000552823 OR10A2Q9H208 303 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 ZNF442Q9H7R0 627 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 SLC7A10Q9NS82 523 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 UBQLN2Q9UHD9 624 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 MAB21L2Q9Y586 359 aa4.9□□□□□ -1.63
LIMA1-215ENST00000552823 A0A0B4J2A0 478 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 ZNF587BE7ETH6 402 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 NTN3O00634 580 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-215ENST00000552823 TSPAN4O14817 238 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 CTDSPLO15194 276 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 CDC14BO60729 498 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 NGFP01138 241 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 ZNF17P17021 662 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 IGFBP3P17936 291 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-215ENST00000552823 SERPINF1P36955 418 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 LUMP51884 338 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-215ENST00000552823 SEC61A1P61619 476 aaKnown RBP4.89□□□□□ -1.63
LIMA1-215ENST00000552823 ARG2P78540 354 aa4.89□□□□□ -1.63
LIMA1-215ENST00000552823 PSG4Q00888 419 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms