RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 ETV2O00321 342 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-213ENST00000552720 MBTPS2O43462 519 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 SFT2D2O95562 160 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 KNG1P01042 644 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 HPNP05981 417 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 GSTP1P09211 210 aaKnown RBP6.59□□□□□ -1.35
LIMA1-213ENST00000552720 FAHP16930 419 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 NAT1P18440 290 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 RCC1P18754 421 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-213ENST00000552720 SLC6A9P48067 706 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 SNU13P55769 128 aaKnown RBP6.59□□□□□ -1.35
LIMA1-213ENST00000552720 AIMP2Q13155 320 aaKnown RBP6.59□□□□□ -1.35
LIMA1-213ENST00000552720 KISS1Q15726 138 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 UBE2V2Q15819 145 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 SLC25A53Q5H9E4 307 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 VAX1Q5SQQ9 334 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 LCE2DQ5TA82 110 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-213ENST00000552720 CPEB2Q7Z5Q1 589 aaKnown RBP6.59□□□□□ -1.35
LIMA1-213ENST00000552720 BAP18Q8IXM2 172 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 OR5H2Q8NGV7 314 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 SSC4DQ8WTU2 575 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 ZNF775Q96BV0 537 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-213ENST00000552720 RASL10BQ96S79 203 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 HDHD3Q9BSH5 251 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-213ENST00000552720 CRB3Q9BUF7 120 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 NMES1Q9C002 83 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 TLNRD1Q9H1K6 362 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 ACKR4Q9NPB9 350 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 EHFQ9NZC4 300 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 GSKIPQ9P0R6 139 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 ANAPC10Q9UM13 185 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 FAM96BQ9Y3D0 163 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 TRBV6-7A0A0A0MS04 114 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 PMS2P1A4D2B8 440 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 ZNF726A6NNF4 738 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 WDPCPO95876 746 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 FAM157CP0CG43 387 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 TPT1P13693 172 aaKnown RBP6.58□□□□□ -1.36
LIMA1-213ENST00000552720 RPS2P15880 293 aaKnown RBP6.58□□□□□ -1.36
LIMA1-213ENST00000552720 TBPP20226 339 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 BLVRBP30043 206 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-213ENST00000552720 GSK3AP49840 483 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 TAS2R31P59538 309 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 CSNK2A1P68400 391 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-213ENST00000552720 ACY1Q03154 408 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 RSPO1Q2MKA7 263 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-213ENST00000552720 MST1LQ2TV78 715 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 OXLD1Q5BKU9 147 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 ZNF585AQ6P3V2 769 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 RABEPKQ7Z6M1 372 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 LHFPL1Q86WI0 220 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 CARFQ8N187 725 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 ESX1Q8N693 406 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 CSNK2A3Q8NEV1 391 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 SLC30A7Q8NEW0 376 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 OR6X1Q8NH79 312 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 STOML3Q8TAV4 291 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 ZNF837Q96EG3 531 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-213ENST00000552720 CPNE2Q96FN4 548 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-213ENST00000552720 PGAM5Q96HS1 289 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 OXGR1Q96P68 337 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 ZNF385AQ96PM9 386 aaKnown RBP6.58□□□□□ -1.36
LIMA1-213ENST00000552720 OR10A2Q9H208 303 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 SLC6A15Q9H2J7 730 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 METTL8Q9H825 291 aaKnown RBP6.58□□□□□ -1.36
LIMA1-213ENST00000552720 MOB1AQ9H8S9 216 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 ELL3Q9HB65 397 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-213ENST00000552720 PCDHB16Q9NRJ7 776 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 OSGIN2Q9Y236 505 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 FREM1Q5H8C1 2179 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 F8W036 122 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 MSTNO14793 375 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 SCGNO76038 276 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 ZFAND5O76080 213 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 CD79AP11912 226 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 FPR2P25090 351 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 PTGFRP43088 359 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 OR3A2P47893 321 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 ID4P47928 161 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 AFF3P51826 1226 aaKnown RBP6.58□□□□□ -1.36
LIMA1-213ENST00000552720 S100A10P60903 97 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 BLOC1S1P78537 153 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 CCL7P80098 99 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 DCDP81605 110 aaKnown RBP6.58□□□□□ -1.36
LIMA1-213ENST00000552720 HIST3H3Q16695 136 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 PABPC1L2AQ5JQF8 200 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 CDCP2Q5VXM1 449 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 DOK3Q7L591 496 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 C6orf201Q7Z4U5 140 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 PEG10Q86TG7 708 aaKnown RBP6.58□□□□□ -1.36
LIMA1-213ENST00000552720 KMT5CQ86Y97 462 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 ARRDC1Q8N5I2 433 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 OR56B1Q8NGI3 324 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 GNRHR2Q96P88 292 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 NUDT16L1Q9BRJ7 211 aaKnown RBP6.58□□□□□ -1.36
LIMA1-213ENST00000552720 HRH4Q9H3N8 390 aa6.58□□□□□ -1.36
LIMA1-213ENST00000552720 SAV1Q9H4B6 383 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-213ENST00000552720 ZNF701Q9NV72 531 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-213ENST00000552720 PURGQ9UJV8 347 aaKnown RBP6.58□□□□□ -1.36
LIMA1-213ENST00000552720 MCTS1Q9ULC4 181 aaKnown RBP6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms