RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 COPS3Q9UNS2 423 aa9.62□□□□□ -0.87
RTN3-209ENST00000538995 ARHGAP32A7KAX9 2087 aa9.61□□□□□ -0.87
RTN3-209ENST00000538995 PRR32B1ATL7 298 aa9.61□□□□□ -0.87
RTN3-209ENST00000538995 SRRM5B3KS81 715 aa9.61□□□□□ -0.87
RTN3-209ENST00000538995 C22orf46C9J442 243 aa9.61□□□□□ -0.87
RTN3-209ENST00000538995 M0R129 80 aa9.61□□□□□ -0.87
RTN3-209ENST00000538995 RGS9O75916 674 aaPredicted RBP9.61□□□□□ -0.87
RTN3-209ENST00000538995 ECDO95905 644 aaPredicted RBP9.61□□□□□ -0.87
RTN3-209ENST00000538995 PLATP00750 562 aa9.61□□□□□ -0.87
RTN3-209ENST00000538995 IGLV3-1P01715 115 aa9.61□□□□□ -0.87
RTN3-209ENST00000538995 EGR1P18146 543 aa9.61□□□□□ -0.87
RTN3-209ENST00000538995 MAP2K3P46734 347 aa9.61□□□□□ -0.87
RTN3-209ENST00000538995 COMPP49747 757 aaPredicted RBP9.61□□□□□ -0.87
RTN3-209ENST00000538995 HCCSP53701 268 aa9.61□□□□□ -0.87
RTN3-209ENST00000538995 BPIFB3P59826 476 aa9.61□□□□□ -0.87
RTN3-209ENST00000538995 CSNK2BP67870 215 aa9.61□□□□□ -0.87
RTN3-209ENST00000538995 HOXA4Q00056 320 aaPredicted RBP9.61□□□□□ -0.87
RTN3-209ENST00000538995 EGR3Q06889 387 aa9.61□□□□□ -0.87
RTN3-209ENST00000538995 FAM76BQ5HYJ3 339 aa9.61□□□□□ -0.87
RTN3-209ENST00000538995 ZFP1Q6P2D0 407 aa9.61□□□□□ -0.87
RTN3-209ENST00000538995 ZNF322Q6U7Q0 402 aaPredicted RBP9.61□□□□□ -0.87
RTN3-209ENST00000538995 CCDC121Q6ZUS5 278 aa9.61□□□□□ -0.87
RTN3-209ENST00000538995 SLC35F2Q8IXU6 374 aa9.61□□□□□ -0.87
RTN3-209ENST00000538995 OR8J1Q8NGP2 316 aa9.61□□□□□ -0.87
RTN3-209ENST00000538995 HPSE2Q8WWQ2 592 aa9.61□□□□□ -0.87
RTN3-209ENST00000538995 PKP2Q99959 881 aa9.61□□□□□ -0.87
RTN3-209ENST00000538995 PBOV1Q9GZY1 135 aa9.61□□□□□ -0.87
RTN3-209ENST00000538995 DNTTIP1Q9H147 329 aa9.61□□□□□ -0.87
RTN3-209ENST00000538995 ZNF69Q9UC07 566 aa9.61□□□□□ -0.87
RTN3-209ENST00000538995 IKZF2Q9UKS7 526 aa9.61□□□□□ -0.87
RTN3-209ENST00000538995 ZNF850A8MQ14 1090 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 ZNF670-ZNF695F2Z2N8 137 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.6□□□□□ -0.87
RTN3-209ENST00000538995 CDIPTO14735 213 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 SRSF10O75494 262 aaKnown RBP9.6□□□□□ -0.87
RTN3-209ENST00000538995 MTRF1O75570 445 aaKnown RBP9.6□□□□□ -0.87
RTN3-209ENST00000538995 GYPAP02724 150 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 HTR1FP30939 366 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 MTNR1AP48039 350 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 CXCR4P61073 352 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 UBA52P62987 128 aaKnown RBP9.6□□□□□ -0.87
RTN3-209ENST00000538995 ACTG1P63261 375 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 TMED1Q13445 227 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 SLC36A1Q7Z2H8 476 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 BCDIN3DQ7Z5W3 292 aaKnown RBP9.6□□□□□ -0.87
RTN3-209ENST00000538995 COMMD2Q86X83 199 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 C10orf67Q8IYJ2 551 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 SIGLECL1Q8N7X8 197 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 ZDHHC22Q8N966 263 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 PNLDC1Q8NA58 520 aaKnown RBP9.6□□□□□ -0.87
RTN3-209ENST00000538995 C22orf15Q8WYQ4 148 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 PIGCQ92535 297 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 DMRTB1Q96MA1 342 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 HIST1H2AAQ96QV6 131 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 IL4I1Q96RQ9 567 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 MS4A7Q9GZW8 240 aaPredicted RBP9.6□□□□□ -0.87
RTN3-209ENST00000538995 SEMA6AQ9H2E6 1030 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 PPP1R3EQ9H7J1 279 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 SMURF1Q9HCE7 757 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 ESM1Q9NQ30 184 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 GPR84Q9NQS5 396 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 R4GMQ9 66 aa9.6□□□□□ -0.87
RTN3-209ENST00000538995 TRAV40A0A0B4J280 105 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 TMEM89A2RUT3 159 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 SAC3D1A6NKF1 404 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 OR5B21A6NL26 309 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 DHRS7CA6NNS2 312 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 ZNF879B4DU55 563 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 LOC110117498-PIK3R3F6TDL0 507 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 CLDN34H7C241 214 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 PSMD9O00233 223 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 P2RY10O00398 339 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 DVL1O14640 695 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 GPR37O15354 613 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 TMPRSS2O15393 492 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 DHRS3O75911 302 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 IGHV4-38-2P0DP08 117 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 CDC42P60953 191 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 FGF12P61328 243 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 GNG3P63215 75 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 MFGE8Q08431 387 aaPredicted RBP9.59□□□□□ -0.87
RTN3-209ENST00000538995 RIPPLY1Q0D2K3 151 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 CEACAM21Q3KPI0 293 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 WDR38Q5JTN6 314 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 BCL2L15Q5TBC7 163 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 ATPAF1Q5TC12 328 aaPredicted RBP9.59□□□□□ -0.87
RTN3-209ENST00000538995 STUMQ69YW2 141 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 C12orf54Q6X4T0 127 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 KCTD8Q6ZWB6 473 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 THAP5Q7Z6K1 395 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 OR51E1Q8TCB6 317 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 PYDC1Q8WXC3 89 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 RFKQ969G6 155 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 RNF170Q96K19 258 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 RAB3IPQ96QF0 476 aaPredicted RBP9.59□□□□□ -0.87
RTN3-209ENST00000538995 FGF23Q9GZV9 251 aaPredicted RBP9.59□□□□□ -0.87
RTN3-209ENST00000538995 RIBC2Q9H4K1 309 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 USE1Q9NZ43 259 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 ENPP5Q9UJA9 477 aa9.59□□□□□ -0.87
RTN3-209ENST00000538995 ORC6Q9Y5N6 252 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms