RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 F5H0A9 414 aaPredicted RBP18.65■□□□□ 0.58
VPS28-205ENST00000526204 GDF9O60383 454 aa18.65■□□□□ 0.58
VPS28-205ENST00000526204 SFT2D2O95562 160 aa18.65■□□□□ 0.58
VPS28-205ENST00000526204 NPY4RP50391 375 aa18.65■□□□□ 0.58
VPS28-205ENST00000526204 ZNF84P51523 738 aa18.65■□□□□ 0.58
VPS28-205ENST00000526204 SUCLG1P53597 346 aaKnown RBP18.65■□□□□ 0.58
VPS28-205ENST00000526204 PAN3Q58A45 887 aaKnown RBP18.65■□□□□ 0.58
VPS28-205ENST00000526204 TMEM156Q8N614 296 aa18.65■□□□□ 0.58
VPS28-205ENST00000526204 S100A13Q99584 98 aa18.65■□□□□ 0.58
VPS28-205ENST00000526204 CHST5Q9GZS9 411 aa18.65■□□□□ 0.58
VPS28-205ENST00000526204 COLQQ9Y215 455 aaPredicted RBP18.65■□□□□ 0.58
VPS28-205ENST00000526204 TRBV6-7A0A0A0MS04 114 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 GJE1A6NN92 205 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 FOXI3A8MTJ6 420 aaPredicted RBP18.64■□□□□ 0.57
VPS28-205ENST00000526204 CBR3O75828 277 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 CD63P08962 238 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 CNR1P21554 472 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 RAC1P63000 192 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 SNTB1Q13884 538 aaKnown RBP18.64■□□□□ 0.57
VPS28-205ENST00000526204 BEX5Q5H9J7 111 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 FAM74A1Q5RGS3 127 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 OR2Y1Q8NGV0 311 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 SPTSSAQ969W0 71 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 ZNF75AQ96N20 296 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 RBM24Q9BX46 236 aaKnown RBP18.64■□□□□ 0.57
VPS28-205ENST00000526204 TM2D1Q9BX74 207 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 FOXD3Q9UJU5 478 aaPredicted RBP18.64■□□□□ 0.57
VPS28-205ENST00000526204 MYO15AQ9UKN7 3530 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 C5orf63A6NC05 138 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 OR5H15A6NDH6 313 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 STMND1H3BQB6 276 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 TEX46H3BTG2 121 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 CA11O75493 328 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 PPA1Q15181 289 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 NSUN5P2Q63ZY6 315 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 LHFPL1Q86WI0 220 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 RPS19BP1Q86WX3 136 aaKnown RBP18.64■□□□□ 0.57
VPS28-205ENST00000526204 MAML2Q8IZL2 1156 aaPredicted RBP18.64■□□□□ 0.57
VPS28-205ENST00000526204 LRRC18Q8N456 261 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 HAS2Q92819 552 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 MRPS24Q96EL2 167 aaKnown RBP18.64■□□□□ 0.57
VPS28-205ENST00000526204 LIN37Q96GY3 246 aaPredicted RBP18.64■□□□□ 0.57
VPS28-205ENST00000526204 JSRP1Q96MG2 331 aaPredicted RBP18.64■□□□□ 0.57
VPS28-205ENST00000526204 UCN2Q96RP3 112 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 PIGQQ9BRB3 760 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 ST6GALNAC5Q9BVH7 336 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 BARX1Q9HBU1 254 aaPredicted RBP18.64■□□□□ 0.57
VPS28-205ENST00000526204 RYDENQ9NUL5 291 aaKnown RBP18.64■□□□□ 0.57
VPS28-205ENST00000526204 HPF1Q9NWY4 346 aa18.64■□□□□ 0.57
VPS28-205ENST00000526204 IGHV3-15A0A0B4J1V0 119 aa18.63■□□□□ 0.57
VPS28-205ENST00000526204 M0R135 149 aa18.63■□□□□ 0.57
VPS28-205ENST00000526204 CFIP05156 583 aa18.63■□□□□ 0.57
VPS28-205ENST00000526204 CPT2P23786 658 aa18.63■□□□□ 0.57
VPS28-205ENST00000526204 BLVRBP30043 206 aaPredicted RBP18.63■□□□□ 0.57
VPS28-205ENST00000526204 DUSP3P51452 185 aaPredicted RBP18.63■□□□□ 0.57
VPS28-205ENST00000526204 SNU13P55769 128 aaKnown RBP18.63■□□□□ 0.57
VPS28-205ENST00000526204 UBE2V2Q15819 145 aa18.63■□□□□ 0.57
VPS28-205ENST00000526204 RSPO1Q2MKA7 263 aaPredicted RBP18.63■□□□□ 0.57
VPS28-205ENST00000526204 CRIP3Q6Q6R5 217 aa18.63■□□□□ 0.57
VPS28-205ENST00000526204 CLEC18BQ6UXF7 455 aa18.63■□□□□ 0.57
VPS28-205ENST00000526204 Q7L0L9 218 aa18.63■□□□□ 0.57
VPS28-205ENST00000526204 C1QL2Q7Z5L3 287 aa18.63■□□□□ 0.57
VPS28-205ENST00000526204 UBALD2Q8IYN6 164 aa18.63■□□□□ 0.57
VPS28-205ENST00000526204 TMEM230Q96A57 120 aa18.63■□□□□ 0.57
VPS28-205ENST00000526204 ZNF799Q96GE5 643 aa18.63■□□□□ 0.57
VPS28-205ENST00000526204 ULBP2Q9BZM5 246 aa18.63■□□□□ 0.57
VPS28-205ENST00000526204 TAS2R3Q9NYW6 316 aa18.63■□□□□ 0.57
VPS28-205ENST00000526204 PIGLQ9Y2B2 252 aa18.63■□□□□ 0.57
VPS28-205ENST00000526204 PCDHGA1Q9Y5H4 931 aa18.63■□□□□ 0.57
VPS28-205ENST00000526204 CSAG2Q9Y5P2 127 aa18.63■□□□□ 0.57
VPS28-205ENST00000526204 FLVCR1Q9Y5Y0 555 aa18.63■□□□□ 0.57
VPS28-205ENST00000526204 SPEGQ15772 3267 aa18.63■□□□□ 0.57
VPS28-205ENST00000526204 NTN3O00634 580 aaPredicted RBP18.62■□□□□ 0.57
VPS28-205ENST00000526204 DNPH1O43598 174 aa18.62■□□□□ 0.57
VPS28-205ENST00000526204 FCGR2AP12318 317 aa18.62■□□□□ 0.57
VPS28-205ENST00000526204 FAHP16930 419 aa18.62■□□□□ 0.57
VPS28-205ENST00000526204 MRPS34P82930 218 aaKnown RBP18.62■□□□□ 0.57
VPS28-205ENST00000526204 MC2RQ01718 297 aa18.62■□□□□ 0.57
VPS28-205ENST00000526204 BTN1A1Q13410 526 aa18.62■□□□□ 0.57
VPS28-205ENST00000526204 SMUG1Q53HV7 270 aa18.62■□□□□ 0.57
VPS28-205ENST00000526204 TFAP2EQ6VUC0 442 aa18.62■□□□□ 0.57
VPS28-205ENST00000526204 WDR5BQ86VZ2 330 aa18.62■□□□□ 0.57
VPS28-205ENST00000526204 CSNK2A3Q8NEV1 391 aa18.62■□□□□ 0.57
VPS28-205ENST00000526204 OR52H1Q8NGJ2 320 aa18.62■□□□□ 0.57
VPS28-205ENST00000526204 OR5D18Q8NGL1 313 aa18.62■□□□□ 0.57
VPS28-205ENST00000526204 SF3B5Q9BWJ5 86 aaKnown RBP18.62■□□□□ 0.57
VPS28-205ENST00000526204 PECRQ9BY49 303 aa18.62■□□□□ 0.57
VPS28-205ENST00000526204 PLEK2Q9NYT0 353 aa18.62■□□□□ 0.57
VPS28-205ENST00000526204 NSG1A0A0A6YYJ2 146 aa18.62■□□□□ 0.57
VPS28-205ENST00000526204 TEX13DA0A0J9YY54 714 aaPredicted RBP18.62■□□□□ 0.57
VPS28-205ENST00000526204 MLF1P58340 268 aa18.62■□□□□ 0.57
VPS28-205ENST00000526204 PXDC1Q5TGL8 231 aa18.62■□□□□ 0.57
VPS28-205ENST00000526204 FAM27BQ5VT28 67 aa18.62■□□□□ 0.57
VPS28-205ENST00000526204 CCDC36Q8IYA8 594 aa18.62■□□□□ 0.57
VPS28-205ENST00000526204 C20orf196Q8IYI0 205 aa18.62■□□□□ 0.57
VPS28-205ENST00000526204 ZIC4Q8N9L1 334 aa18.62■□□□□ 0.57
VPS28-205ENST00000526204 STOML3Q8TAV4 291 aa18.62■□□□□ 0.57
VPS28-205ENST00000526204 NPRL2Q8WTW4 380 aa18.62■□□□□ 0.57
VPS28-205ENST00000526204 LDAHQ9H6V9 325 aa18.62■□□□□ 0.57
VPS28-205ENST00000526204 ZFP36L1Q07352 338 aaKnown RBP18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms