RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 TMEM86BQ8N661 226 aa5.41□□□□□ -1.54
CD44-221ENST00000526000 GCSAMQ8N6F7 178 aa5.41□□□□□ -1.54
CD44-221ENST00000526000 OR51L1Q8NGJ5 315 aa5.41□□□□□ -1.54
CD44-221ENST00000526000 Q8TCH9 128 aa5.41□□□□□ -1.54
CD44-221ENST00000526000 LRRC29Q8WV35 223 aa5.41□□□□□ -1.54
CD44-221ENST00000526000 C17orf50Q8WW18 174 aa5.41□□□□□ -1.54
CD44-221ENST00000526000 ZNRF4Q8WWF5 429 aa5.41□□□□□ -1.54
CD44-221ENST00000526000 TRUB1Q8WWH5 349 aaKnown RBP5.41□□□□□ -1.54
CD44-221ENST00000526000 H1FXQ92522 213 aaKnown RBP5.41□□□□□ -1.54
CD44-221ENST00000526000 RORBQ92753 470 aa5.41□□□□□ -1.54
CD44-221ENST00000526000 MAP6Q96JE9 813 aa5.41□□□□□ -1.54
CD44-221ENST00000526000 CIB1Q99828 191 aa5.41□□□□□ -1.54
CD44-221ENST00000526000 NIPSNAP1Q9BPW8 284 aa5.41□□□□□ -1.54
CD44-221ENST00000526000 ADAT1Q9BUB4 502 aaKnown RBP5.41□□□□□ -1.54
CD44-221ENST00000526000 IFT27Q9BW83 186 aa5.41□□□□□ -1.54
CD44-221ENST00000526000 HDHD2Q9H0R4 259 aa5.41□□□□□ -1.54
CD44-221ENST00000526000 DPAGT1Q9H3H5 408 aa5.41□□□□□ -1.54
CD44-221ENST00000526000 RPUSD1Q9UJJ7 312 aaKnown RBP5.41□□□□□ -1.54
CD44-221ENST00000526000 TANC2Q9HCD6 1990 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 MEIOCA2RUB1 952 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 OR6C68A6NDL8 312 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 BTBD17A6NE02 478 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 RNASEK-C17orf49H0YIS7 233 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 H3BN98 237 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 M0R135 149 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 BHLHE40O14503 412 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 EI24O14681 340 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 SLC16A6O15403 523 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 TBX1O43435 398 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 MPZL2O60487 215 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 ATP6V1G2O95670 118 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 PAHP00439 452 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 VSIG10L2P0DP72 767 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 ZNF823P16415 610 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 ZNF3P17036 446 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 PAICSP22234 425 aaKnown RBP5.4□□□□□ -1.54
CD44-221ENST00000526000 PRKACGP22612 351 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 EEF1B2P24534 225 aaKnown RBP5.4□□□□□ -1.54
CD44-221ENST00000526000 NOS3P29474 1203 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 CRABP1P29762 137 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 GABRA5P31644 462 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 NPY4RP50391 375 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 BLVRAP53004 296 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 CDC42P60953 191 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 CSNK2BP67870 215 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 CDK5Q00535 292 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 PPP1R8Q12972 351 aaKnown RBP5.4□□□□□ -1.54
CD44-221ENST00000526000 IL18R1Q13478 541 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 KCNJ8Q15842 424 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 C2orf68Q2NKX9 166 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 BEAN1Q3B7T3 259 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 SLC36A3Q495N2 470 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 WDR38Q5JTN6 314 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 ZBTB37Q5TC79 503 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 TTC23Q5W5X9 447 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 DNM1P34Q6PK57 102 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 Q6ZPA2 131 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 Q6ZTK2 550 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 C11orf53Q8IXP5 236 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 HS3ST5Q8IZT8 346 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 FAM216BQ8N7L0 139 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 CYB561A3Q8NBI2 242 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 SDR9C7Q8NEX9 313 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 SLC26A10Q8NG04 563 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 OR56B2PQ8NGI1 322 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 PPP1R35Q8TAP8 253 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 MRAPQ8TCY5 172 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 ERGIC1Q969X5 290 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 ZNF799Q96GE5 643 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 NKX3-1Q99801 234 aaPredicted RBP5.4□□□□□ -1.54
CD44-221ENST00000526000 ATF6BQ99941 703 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 TSSK6Q9BXA6 273 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 C16orf95Q9H693 158 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 BRD7Q9NPI1 651 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 PNRC2Q9NPJ4 139 aaKnown RBP5.4□□□□□ -1.54
CD44-221ENST00000526000 CMC2Q9NRP2 79 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 TBC1D23Q9NUY8 699 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 MRPL22Q9NWU5 206 aaKnown RBP5.4□□□□□ -1.54
CD44-221ENST00000526000 SMPD3Q9NY59 655 aaPredicted RBP5.4□□□□□ -1.54
CD44-221ENST00000526000 ZNF391Q9UJN7 358 aa5.4□□□□□ -1.54
CD44-221ENST00000526000 NOTCH3Q9UM47 2321 aa5.4□□□□□ -1.55
CD44-221ENST00000526000 SNTNA6NMZ2 147 aa5.39□□□□□ -1.55
CD44-221ENST00000526000 RIIAD1A6NNX1 92 aa5.39□□□□□ -1.55
CD44-221ENST00000526000 ZAR1LA6NP61 321 aa5.39□□□□□ -1.55
CD44-221ENST00000526000 E9PQ18 207 aa5.39□□□□□ -1.55
CD44-221ENST00000526000 H0YAE9 185 aa5.39□□□□□ -1.55
CD44-221ENST00000526000 NPFFO15130 113 aa5.39□□□□□ -1.55
CD44-221ENST00000526000 NDUFB3O43676 98 aa5.39□□□□□ -1.55
CD44-221ENST00000526000 NDUFA2O43678 99 aa5.39□□□□□ -1.55
CD44-221ENST00000526000 GMDSO60547 372 aa5.39□□□□□ -1.55
CD44-221ENST00000526000 FBP1P09467 338 aa5.39□□□□□ -1.55
CD44-221ENST00000526000 PSKH1P11801 424 aa5.39□□□□□ -1.55
CD44-221ENST00000526000 NDUFB7P17568 137 aa5.39□□□□□ -1.55
CD44-221ENST00000526000 AMY2BP19961 511 aa5.39□□□□□ -1.55
CD44-221ENST00000526000 PEX2P28328 305 aa5.39□□□□□ -1.55
CD44-221ENST00000526000 TGFBR2P37173 567 aa5.39□□□□□ -1.55
CD44-221ENST00000526000 VHLP40337 213 aa5.39□□□□□ -1.55
CD44-221ENST00000526000 GABRA2P47869 451 aa5.39□□□□□ -1.55
CD44-221ENST00000526000 SLC25A1P53007 311 aa5.39□□□□□ -1.55
CD44-221ENST00000526000 KHDRBS1Q07666 443 aaKnown RBP eCLIP5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms