RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 NUTF2P61970 127 aaKnown RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 PPP1CBP62140 327 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 RANP62826 216 aaKnown RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 HIST1H3AP68431 136 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 SLC35A1P78382 337 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 RPL19P84098 196 aaKnown RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 H3F3AP84243 136 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM3AP98173 230 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 FKBP3Q00688 224 aaKnown RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 SLC25A11Q02978 314 aaKnown RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF92Q03936 586 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TNFRSF9Q07011 255 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 BAXQ07812 192 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 AESQ08117 197 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 FCHO2Q0JRZ9 810 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TCP10Q12799 353 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 EIF4EBP2Q13542 120 aaPredicted RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR2F1Q13607 317 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM53BQ14153 422 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 EDDM3AQ14507 147 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 PRPSAP1Q14558 356 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF235Q14590 738 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 IHHQ14623 411 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 SMCO1Q147U7 214 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 SPCS2Q15005 226 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF146Q15072 292 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 EBPQ15125 230 aaKnown RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 PON3Q15166 354 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 GUSBP1Q15486 140 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TAF1AQ15573 450 aaPredicted RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 SLC9A3R2Q15599 337 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TSNQ15631 228 aaKnown RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 LTB4RQ15722 352 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF726P1Q15940 193 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 BATFQ16520 125 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 SNRNP35Q16560 246 aaKnown RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 LRRC36Q1X8D7 754 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 LRRC26Q2I0M4 334 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 HLA-DRB5Q30154 266 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 CEACAM21Q3KPI0 293 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZBED5Q49AG3 693 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 C14orf28Q4W4Y0 310 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 LIN52Q52LA3 116 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 PYCR3Q53H96 274 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM97Q5BJF2 176 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR10J3Q5JRS4 329 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 WDR38Q5JTN6 314 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 PAGE3Q5JUK9 113 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TEX30Q5JUR7 227 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 FFAR4Q5NUL3 377 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 SLC25A30Q5SVS4 291 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM182AQ5T1J6 154 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 FHL5Q5TD97 284 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 HIST2H3PS2Q5TEC6 136 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZC2HC1BQ5TFG8 222 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 C1orf146Q5VVC0 180 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 HACD4Q5VWC8 232 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 CST9Q5W186 159 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TRIQKQ629K1 86 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 SAXO2Q658L1 398 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM42Q69YG0 159 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 LAMTOR1Q6IAA8 161 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR2T5Q6IEZ7 315 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM71E1Q6IPT2 247 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 PWWP2BQ6NUJ5 590 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TNFAIP8L2Q6P589 184 aaPredicted RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF530Q6P9A1 599 aaPredicted RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 DHRS4L2Q6PKH6 230 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 WDR74Q6RFH5 385 aaPredicted RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 DUX4L9Q6RFH8 374 aaPredicted RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 SMARCD3Q6STE5 483 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 EPGNQ6UW88 154 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 UGT2A3Q6UWM9 527 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 BAIAP2L2Q6UXY1 529 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 Q6ZN92 141 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TEX43Q6ZNM6 134 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM92BQ6ZTR7 304 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 SH2D5Q6ZV89 423 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM183BPQ6ZVS7 135 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 HIST2H3AQ71DI3 136 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMUB2Q71RG4 321 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 NOTCH2NLQ7Z3S9 236 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF571Q7Z3V5 609 aaPredicted RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 PTAR1Q7Z6K3 402 aaPredicted RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 GALNT10Q86SR1 603 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TRPT1Q86TN4 253 aaKnown RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 SLC51BQ86UW2 128 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 THOC6Q86W42 341 aaKnown RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 RALGPS2Q86X27 583 aaPredicted RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 CARM1Q86X55 608 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 NIT1Q86X76 327 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 CDC20BQ86Y33 519 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 RAB43Q86YS6 212 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 CBLN2Q8IUK8 224 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 C10orf107Q8IVU9 208 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 SLC30A8Q8IWU4 369 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 FBXO16Q8IX29 292 aaPredicted RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 C9orf40Q8IXQ3 194 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 CPNE9Q8IYJ1 553 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM71AQ8IYT1 594 aa0.46□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms