RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 CDH15P55291 814 aa12.04□□□□□ -0.48
NUP54-216ENST00000514901 CCDC58Q4VC31 144 aa12.04□□□□□ -0.48
NUP54-216ENST00000514901 ZDHHC23Q8IYP9 409 aa12.04□□□□□ -0.48
NUP54-216ENST00000514901 OR52N1Q8NH53 320 aa12.04□□□□□ -0.48
NUP54-216ENST00000514901 OR5P3Q8WZ94 311 aa12.04□□□□□ -0.48
NUP54-216ENST00000514901 MYDGFQ969H8 173 aa12.04□□□□□ -0.48
NUP54-216ENST00000514901 ITPKCQ96DU7 683 aa12.04□□□□□ -0.48
NUP54-216ENST00000514901 ZNF184Q99676 751 aaPredicted RBP12.04□□□□□ -0.48
NUP54-216ENST00000514901 RTL8AQ9BWD3 113 aa12.04□□□□□ -0.48
NUP54-216ENST00000514901 FKBP14Q9NWM8 211 aa12.04□□□□□ -0.48
NUP54-216ENST00000514901 TPRKBQ9Y3C4 175 aa12.04□□□□□ -0.48
NUP54-216ENST00000514901 WIPI2Q9Y4P8 454 aa12.04□□□□□ -0.48
NUP54-216ENST00000514901 YLPM1P49750 1951 aaKnown RBP12.03□□□□□ -0.48
NUP54-216ENST00000514901 TANC2Q9HCD6 1990 aa12.03□□□□□ -0.48
NUP54-216ENST00000514901 LOC100289279A0A1B0GTE1 492 aa12.03□□□□□ -0.48
NUP54-216ENST00000514901 TMEM212A6NML5 194 aa12.03□□□□□ -0.48
NUP54-216ENST00000514901 OR4C45A6NMZ5 311 aa12.03□□□□□ -0.48
NUP54-216ENST00000514901 SLC1A7O00341 560 aa12.03□□□□□ -0.48
NUP54-216ENST00000514901 SERPINA3P01011 423 aa12.03□□□□□ -0.48
NUP54-216ENST00000514901 NRASP01111 189 aa12.03□□□□□ -0.48
NUP54-216ENST00000514901 GZMKP49863 264 aa12.03□□□□□ -0.48
NUP54-216ENST00000514901 NANOS3P60323 173 aaKnown RBP12.03□□□□□ -0.48
NUP54-216ENST00000514901 ODF4Q2M2E3 257 aa12.03□□□□□ -0.48
NUP54-216ENST00000514901 TMEM249Q2WGJ8 235 aa12.03□□□□□ -0.48
NUP54-216ENST00000514901 CEACAM21Q3KPI0 293 aa12.03□□□□□ -0.48
NUP54-216ENST00000514901 CLVS2Q5SYC1 327 aa12.03□□□□□ -0.48
NUP54-216ENST00000514901 RNLSQ5VYX0 342 aa12.03□□□□□ -0.48
NUP54-216ENST00000514901 TMEM42Q69YG0 159 aa12.03□□□□□ -0.48
NUP54-216ENST00000514901 RPL22L1Q6P5R6 122 aaKnown RBP12.03□□□□□ -0.48
NUP54-216ENST00000514901 AHSA2Q719I0 299 aa12.03□□□□□ -0.48
NUP54-216ENST00000514901 ZNF676Q8N7Q3 588 aa12.03□□□□□ -0.48
NUP54-216ENST00000514901 MAPK1IP1LQ8NDC0 245 aa12.03□□□□□ -0.48
NUP54-216ENST00000514901 OR5A2Q8NGI9 324 aa12.03□□□□□ -0.48
NUP54-216ENST00000514901 RNF170Q96K19 258 aa12.03□□□□□ -0.48
NUP54-216ENST00000514901 COMMD4Q9H0A8 199 aa12.03□□□□□ -0.48
NUP54-216ENST00000514901 PLEKHA1Q9HB21 404 aa12.03□□□□□ -0.48
NUP54-216ENST00000514901 BABAM2Q9NXR7 383 aa12.03□□□□□ -0.48
NUP54-216ENST00000514901 HHLA2Q9UM44 414 aa12.03□□□□□ -0.48
NUP54-216ENST00000514901 CR1P17927 2039 aa12.03□□□□□ -0.48
NUP54-216ENST00000514901 HIVEP2P31629 2446 aa12.02□□□□□ -0.48
NUP54-216ENST00000514901 LOC107986453A0A1B0GWG9 222 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 OR5B21A6NL26 309 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 A6NLC8 198 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 PTGES3LE9PB15 166 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 CDK1P06493 297 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 GRPP07492 148 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 FAHP16930 419 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 CPT2P23786 658 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 PMELP40967 661 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 BTG1P62324 171 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 GNG3P63215 75 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 MVKQ03426 396 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 TMEM155Q4W5P6 130 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 FAM76BQ5HYJ3 339 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 PRAMEF6Q5VXH4 476 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 CYB5R2Q6BCY4 276 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 CLEC9AQ6UXN8 241 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 MOB3CQ70IA8 216 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 LRRC28Q86X40 367 aaPredicted RBP12.02□□□□□ -0.49
NUP54-216ENST00000514901 LURAP1LQ8IV03 231 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 RDH10Q8IZV5 341 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 MUC20Q8N307 709 aaPredicted RBP12.02□□□□□ -0.49
NUP54-216ENST00000514901 OR1M1Q8NGA1 313 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 OR5AK2Q8NH90 309 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 ZNF420Q8TAQ5 688 aaPredicted RBP12.02□□□□□ -0.49
NUP54-216ENST00000514901 DVL3Q92997 716 aaPredicted RBP12.02□□□□□ -0.49
NUP54-216ENST00000514901 TECTBQ96PL2 329 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 UFSP2Q9NUQ7 469 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 RNF7Q9UBF6 113 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 CLEC2DQ9UHP7 191 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 ERGIC3Q9Y282 383 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 PCDHGB5Q9Y5G0 923 aa12.02□□□□□ -0.49
NUP54-216ENST00000514901 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.02□□□□□ -0.494e-8■■■■■ 30.4
NUP54-216ENST00000514901 TRBV2A0A0J9YWF9 115 aa12.01□□□□□ -0.49
NUP54-216ENST00000514901 IGHV3-64DA0A0J9YX35 117 aa12.01□□□□□ -0.49
NUP54-216ENST00000514901 LRP5LA4QPB2 252 aa12.01□□□□□ -0.49
NUP54-216ENST00000514901 MYL12BO14950 172 aa12.01□□□□□ -0.49
NUP54-216ENST00000514901 DENRO43583 198 aaKnown RBP12.01□□□□□ -0.49
NUP54-216ENST00000514901 GATBO75879 557 aaKnown RBP12.01□□□□□ -0.49
NUP54-216ENST00000514901 IGHV2-70P01814 119 aa12.01□□□□□ -0.49
NUP54-216ENST00000514901 C21orf33P30042 268 aaPredicted RBP12.01□□□□□ -0.49
NUP54-216ENST00000514901 CFHR2P36980 270 aa12.01□□□□□ -0.49
NUP54-216ENST00000514901 MDH2P40926 338 aaKnown RBP12.01□□□□□ -0.49
NUP54-216ENST00000514901 MPPED2Q15777 294 aa12.01□□□□□ -0.49
NUP54-216ENST00000514901 AVPI1Q5T686 147 aa12.01□□□□□ -0.49
NUP54-216ENST00000514901 OR2G6Q5TZ20 316 aa12.01□□□□□ -0.49
NUP54-216ENST00000514901 KCTD8Q6ZWB6 473 aa12.01□□□□□ -0.49
NUP54-216ENST00000514901 SPICQ8N5J4 248 aa12.01□□□□□ -0.49
NUP54-216ENST00000514901 CLDND2Q8NHS1 167 aa12.01□□□□□ -0.49
NUP54-216ENST00000514901 GATAD2BQ8WXI9 593 aa12.01□□□□□ -0.49
NUP54-216ENST00000514901 PP6455Q8WZ26 134 aa12.01□□□□□ -0.49
NUP54-216ENST00000514901 RAB39BQ96DA2 213 aa12.01□□□□□ -0.49
NUP54-216ENST00000514901 CNBD2Q96M20 576 aa12.01□□□□□ -0.49
NUP54-216ENST00000514901 CDCA4Q9BXL8 241 aa12.01□□□□□ -0.49
NUP54-216ENST00000514901 TLNRD1Q9H1K6 362 aa12.01□□□□□ -0.49
NUP54-216ENST00000514901 TRIM36Q9NQ86 728 aa12.01□□□□□ -0.49
NUP54-216ENST00000514901 C1orf123Q9NWV4 160 aa12.01□□□□□ -0.49
NUP54-216ENST00000514901 BLOC1S6Q9UL45 172 aa12.01□□□□□ -0.49
NUP54-216ENST00000514901 PPIAL4EA0A075B759 164 aa12□□□□□ -0.49
NUP54-216ENST00000514901 ISPDA4D126 451 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms