RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 MMP15P51511 669 aa17.15■□□□□ 0.34
USP53-208ENST00000514305 NANOS3P60323 173 aaKnown RBP17.15■□□□□ 0.34
USP53-208ENST00000514305 ODF4Q2M2E3 257 aa17.15■□□□□ 0.34
USP53-208ENST00000514305 MS4A15Q8N5U1 240 aa17.15■□□□□ 0.34
USP53-208ENST00000514305 PLPP7Q8NBV4 271 aa17.15■□□□□ 0.34
USP53-208ENST00000514305 ZNF485Q8NCK3 441 aa17.15■□□□□ 0.34
USP53-208ENST00000514305 GPR148Q8TDV2 347 aa17.15■□□□□ 0.34
USP53-208ENST00000514305 PPP1R14AQ96A00 147 aa17.15■□□□□ 0.34
USP53-208ENST00000514305 SLC30A2Q9BRI3 323 aa17.15■□□□□ 0.34
USP53-208ENST00000514305 MYEF2Q9P2K5 600 aaKnown RBP17.15■□□□□ 0.34
USP53-208ENST00000514305 ZNF281Q9Y2X9 895 aa17.15■□□□□ 0.34
USP53-208ENST00000514305 LOC107986453A0A1B0GWG9 222 aa17.14■□□□□ 0.33
USP53-208ENST00000514305 TPD52L2O43399 206 aaKnown RBP17.14■□□□□ 0.33
USP53-208ENST00000514305 PLPP2O43688 288 aa17.14■□□□□ 0.33
USP53-208ENST00000514305 CD2P06729 351 aa17.14■□□□□ 0.33
USP53-208ENST00000514305 ADH4P08319 380 aa17.14■□□□□ 0.33
USP53-208ENST00000514305 HSMCR30P0CW71 290 aa17.14■□□□□ 0.33
USP53-208ENST00000514305 CELP19835 753 aa17.14■□□□□ 0.33
USP53-208ENST00000514305 KIR3DL2P43630 455 aa17.14■□□□□ 0.33
USP53-208ENST00000514305 SLC3A1Q07837 685 aa17.14■□□□□ 0.33
USP53-208ENST00000514305 MLLT11Q13015 90 aaPredicted RBP17.14■□□□□ 0.33
USP53-208ENST00000514305 OR8G1Q15617 311 aa17.14■□□□□ 0.33
USP53-208ENST00000514305 TRAM1Q15629 374 aa17.14■□□□□ 0.33
USP53-208ENST00000514305 ALKBH6Q3KRA9 238 aa17.14■□□□□ 0.33
USP53-208ENST00000514305 YIF1BQ5BJH7 314 aa17.14■□□□□ 0.33
USP53-208ENST00000514305 Q6ZSR3 168 aa17.14■□□□□ 0.33
USP53-208ENST00000514305 SPARTQ8N0X7 666 aa17.14■□□□□ 0.33
USP53-208ENST00000514305 BHLHE23Q8NDY6 225 aa17.14■□□□□ 0.33
USP53-208ENST00000514305 TSPAN14Q8NG11 270 aa17.14■□□□□ 0.33
USP53-208ENST00000514305 FAM168AQ92567 244 aa17.14■□□□□ 0.33
USP53-208ENST00000514305 SGCDQ92629 289 aa17.14■□□□□ 0.33
USP53-208ENST00000514305 LYZL4Q96KX0 146 aa17.14■□□□□ 0.33
USP53-208ENST00000514305 ZNF696Q9H7X3 374 aa17.14■□□□□ 0.33
USP53-208ENST00000514305 ACOT13Q9NPJ3 140 aa17.14■□□□□ 0.33
USP53-208ENST00000514305 PIGLQ9Y2B2 252 aa17.14■□□□□ 0.33
USP53-208ENST00000514305 V9GYS6 101 aa17.14■□□□□ 0.33
USP53-208ENST00000514305 A0A1B0GTI1 187 aa17.13■□□□□ 0.33
USP53-208ENST00000514305 A8MV72 311 aaPredicted RBP17.13■□□□□ 0.33
USP53-208ENST00000514305 E9PI62 339 aa17.13■□□□□ 0.33
USP53-208ENST00000514305 SPRY3O43610 288 aa17.13■□□□□ 0.33
USP53-208ENST00000514305 ZFPL1O95159 310 aa17.13■□□□□ 0.33
USP53-208ENST00000514305 CST4P01036 141 aa17.13■□□□□ 0.33
USP53-208ENST00000514305 IFNA2P01563 188 aa17.13■□□□□ 0.33
USP53-208ENST00000514305 CSF3P09919 207 aa17.13■□□□□ 0.33
USP53-208ENST00000514305 NAT2P11245 290 aa17.13■□□□□ 0.33
USP53-208ENST00000514305 SLC25A16P16260 332 aa17.13■□□□□ 0.33
USP53-208ENST00000514305 ZNF20P17024 532 aa17.13■□□□□ 0.33
USP53-208ENST00000514305 TNFRSF1AP19438 455 aa17.13■□□□□ 0.33
USP53-208ENST00000514305 SRP9P49458 86 aaKnown RBP17.13■□□□□ 0.33
USP53-208ENST00000514305 GTF2A1P52655 376 aaPredicted RBP17.13■□□□□ 0.33
USP53-208ENST00000514305 EMX1Q04741 257 aaPredicted RBP17.13■□□□□ 0.33
USP53-208ENST00000514305 DMKNQ6E0U4 476 aaPredicted RBP17.13■□□□□ 0.33
USP53-208ENST00000514305 ZNF525Q8N782 197 aa17.13■□□□□ 0.33
USP53-208ENST00000514305 OR2Z1Q8NG97 314 aa17.13■□□□□ 0.33
USP53-208ENST00000514305 OR13C3Q8NGS6 347 aa17.13■□□□□ 0.33
USP53-208ENST00000514305 OR14K1Q8NGZ2 314 aa17.13■□□□□ 0.33
USP53-208ENST00000514305 OR8S1Q8NH09 359 aa17.13■□□□□ 0.33
USP53-208ENST00000514305 TSEN15Q8WW01 171 aaKnown RBP17.13■□□□□ 0.33
USP53-208ENST00000514305 PP6455Q8WZ26 134 aa17.13■□□□□ 0.33
USP53-208ENST00000514305 ELMOD3Q96FG2 381 aa17.13■□□□□ 0.33
USP53-208ENST00000514305 TECTBQ96PL2 329 aa17.13■□□□□ 0.33
USP53-208ENST00000514305 MGLLQ99685 303 aa17.13■□□□□ 0.33
USP53-208ENST00000514305 PAPOLGQ9BWT3 736 aaKnown RBP17.13■□□□□ 0.33
USP53-208ENST00000514305 C14orf119Q9NWQ9 140 aa17.13■□□□□ 0.33
USP53-208ENST00000514305 IL19Q9UHD0 177 aa17.13■□□□□ 0.33
USP53-208ENST00000514305 DHDHQ9UQ10 334 aa17.13■□□□□ 0.33
USP53-208ENST00000514305 LSM2Q9Y333 95 aaKnown RBP17.13■□□□□ 0.33
USP53-208ENST00000514305 YLPM1P49750 1951 aaKnown RBP17.12■□□□□ 0.33
USP53-208ENST00000514305 C5orf63A6NC05 138 aa17.12■□□□□ 0.33
USP53-208ENST00000514305 GATBO75879 557 aaKnown RBP17.12■□□□□ 0.33
USP53-208ENST00000514305 PSMA1P25786 263 aaKnown RBP17.12■□□□□ 0.33
USP53-208ENST00000514305 EFNA4P52798 201 aa17.12■□□□□ 0.33
USP53-208ENST00000514305 CLVS2Q5SYC1 327 aa17.12■□□□□ 0.33
USP53-208ENST00000514305 CELF2-AS1Q8N7Q2 184 aa17.12■□□□□ 0.33
USP53-208ENST00000514305 RPS4Y2Q8TD47 263 aa17.12■□□□□ 0.33
USP53-208ENST00000514305 PIGCQ92535 297 aa17.12■□□□□ 0.33
USP53-208ENST00000514305 GHSRQ92847 366 aa17.12■□□□□ 0.33
USP53-208ENST00000514305 OR5M11Q96RB7 305 aa17.12■□□□□ 0.33
USP53-208ENST00000514305 MICU1Q9BPX6 476 aa17.12■□□□□ 0.33
USP53-208ENST00000514305 PDCD1LG2Q9BQ51 273 aa17.12■□□□□ 0.33
USP53-208ENST00000514305 MSL2Q9HCI7 577 aa17.12■□□□□ 0.33
USP53-208ENST00000514305 MYOZ1Q9NP98 299 aaPredicted RBP17.12■□□□□ 0.33
USP53-208ENST00000514305 CD55P08174 381 aa17.11■□□□□ 0.33
USP53-208ENST00000514305 OCM2P0CE71 109 aa17.11■□□□□ 0.33
USP53-208ENST00000514305 OCMP0CE72 109 aaPredicted RBP17.11■□□□□ 0.33
USP53-208ENST00000514305 CA6P23280 308 aa17.11■□□□□ 0.33
USP53-208ENST00000514305 MAPK3P27361 379 aaPredicted RBP17.11■□□□□ 0.33
USP53-208ENST00000514305 MAP2K4P45985 399 aa17.11■□□□□ 0.33
USP53-208ENST00000514305 TNFAIP6P98066 277 aaPredicted RBP17.11■□□□□ 0.33
USP53-208ENST00000514305 LOXL1Q08397 574 aaPredicted RBP17.11■□□□□ 0.33
USP53-208ENST00000514305 TMEM249Q2WGJ8 235 aa17.11■□□□□ 0.33
USP53-208ENST00000514305 CHRFAM7AQ494W8 412 aa17.11■□□□□ 0.33
USP53-208ENST00000514305 KRT74Q7RTS7 529 aa17.11■□□□□ 0.33
USP53-208ENST00000514305 ZDHHC23Q8IYP9 409 aa17.11■□□□□ 0.33
USP53-208ENST00000514305 RDH10Q8IZV5 341 aa17.11■□□□□ 0.33
USP53-208ENST00000514305 SPATA3Q8NHX4 192 aa17.11■□□□□ 0.33
USP53-208ENST00000514305 ADAT1Q9BUB4 502 aaKnown RBP17.11■□□□□ 0.33
USP53-208ENST00000514305 SLC7A11Q9UPY5 501 aa17.11■□□□□ 0.33
USP53-208ENST00000514305 MAGEA13PA6NCF6 341 aa17.1■□□□□ 0.33
USP53-208ENST00000514305 IFNL4K9M1U5 179 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms