RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 CNIH1O95406 144 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 SFT2D2O95562 160 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 CBX7O95931 251 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 CD74P04233 296 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 LINC00869P0C866 280 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 SDC1P18827 310 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 ZBTB25P24278 435 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 OPRK1P41145 380 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 RFX5P48382 616 aaPredicted RBP3.24□□□□□ -1.89
USP53-205ENST00000509769 STARD6P59095 220 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 PPIAP62937 165 aaKnown RBP3.24□□□□□ -1.89
USP53-205ENST00000509769 FUT2Q10981 343 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 GPR18Q14330 331 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 MS4A13Q5J8X5 152 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 OR4C11Q6IEV9 310 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 DEGS2Q6QHC5 323 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 C17orf99Q6UX52 265 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 CPOQ8IVL8 374 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 TTC9CQ8N5M4 171 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 OR9Q2Q8NGE9 314 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 PDLIM5Q96HC4 596 aaKnown RBP3.24□□□□□ -1.89
USP53-205ENST00000509769 THOC3Q96J01 351 aaKnown RBP3.24□□□□□ -1.89
USP53-205ENST00000509769 C4orf36Q96KX1 117 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 ATP6V0BQ99437 205 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 SMOQ99835 787 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 PTPN18Q99952 460 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 TMEM208Q9BTX3 173 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 NTMT1Q9BV86 223 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 TMEM147Q9BVK8 224 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 HEYLQ9NQ87 328 aaPredicted RBP3.24□□□□□ -1.89
USP53-205ENST00000509769 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.24□□□□□ -1.89
USP53-205ENST00000509769 SLC17A4Q9Y2C5 497 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 RCL1Q9Y2P8 373 aaKnown RBP3.24□□□□□ -1.89
USP53-205ENST00000509769 LSM2Q9Y333 95 aaKnown RBP3.24□□□□□ -1.89
USP53-205ENST00000509769 OR1A2Q9Y585 309 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 A0A1W2PP11 408 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 MBLAC1A4D2B0 266 aaPredicted RBP3.24□□□□□ -1.89
USP53-205ENST00000509769 C3orf80F5H4A9 247 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 PHF1O43189 567 aaPredicted RBP3.24□□□□□ -1.89
USP53-205ENST00000509769 ALDOAP04075 364 aaKnown RBP3.24□□□□□ -1.89
USP53-205ENST00000509769 ISG15P05161 165 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 IL2RGP31785 369 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 ELLP55199 621 aaPredicted RBP3.24□□□□□ -1.89
USP53-205ENST00000509769 ISL1P61371 349 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 HIST1H1AQ02539 215 aaPredicted RBP3.24□□□□□ -1.89
USP53-205ENST00000509769 ZNF816Q0VGE8 651 aaPredicted RBP3.24□□□□□ -1.89
USP53-205ENST00000509769 DUSP5Q16690 384 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 SLC22A6Q4U2R8 563 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 CELF3Q5SZQ8 465 aaKnown RBP3.24□□□□□ -1.89
USP53-205ENST00000509769 LAMTOR1Q6IAA8 161 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 TMEM107Q6UX40 140 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 LHFPL2Q6ZUX7 228 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 MBOAT2Q6ZWT7 520 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 DOK3Q7L591 496 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 H2BFWTQ7Z2G1 175 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 NUFIP2Q7Z417 695 aaKnown RBP3.24□□□□□ -1.89
USP53-205ENST00000509769 AMIGO3Q86WK7 504 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 SPNS2Q8IVW8 549 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 OR8I2Q8N0Y5 310 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 CA13Q8N1Q1 262 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 LRRC18Q8N456 261 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 PQLC3Q8N755 202 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 NUP43Q8NFH3 380 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 OR10J5Q8NHC4 309 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 NUBPLQ8TB37 319 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 SPPL3Q8TCT6 385 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 DOK4Q8TEW6 326 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 DAZLQ92904 295 aaKnown RBP3.24□□□□□ -1.89
USP53-205ENST00000509769 SPATA25Q9BR10 227 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 ZPBPQ9BS86 351 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 A4GALTQ9NPC4 353 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 TMEM38BQ9NVV0 291 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 DMAC2Q9NW81 257 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 ELOVL2Q9NXB9 296 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 CACNG5Q9UF02 275 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 SPCS1Q9Y6A9 102 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 MTCH2Q9Y6C9 303 aa3.24□□□□□ -1.89
USP53-205ENST00000509769 TRAV8-4A0A0B4J246 113 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 A0A1B0GVT2 93 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 TCRBV7S2A1N4TA0A589 114 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 ZNF593O00488 134 aaPredicted RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 SPINT2O43291 252 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 CTNSO60931 367 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 MPDU1O75352 247 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 GCM2O75603 506 aaPredicted RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 USP2O75604 605 aaPredicted RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 CD1AP06126 327 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 ASGR2P07307 311 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 FGF2P09038 288 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 COL11A2P13942 1736 aaPredicted RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 P2RY4P51582 365 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 CLDN12P56749 244 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 FXYD4P59646 89 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 ERHP84090 104 aaKnown RBP3.23□□□□□ -1.89
USP53-205ENST00000509769 PDE7AQ13946 482 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 NPY5RQ15761 445 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 LRFN4Q6PJG9 635 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 HSD11B1LQ7Z5J1 315 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 OR52B6Q8NGF0 335 aa3.23□□□□□ -1.89
USP53-205ENST00000509769 OR4S2Q8NH73 311 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms