RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 GAB2Q9UQC2 676 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 KCNE1BA0A087WTH5 132 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 LINC00862A6NCI5 91 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 SNRPEP62304 92 aaKnown RBP11.79□□□□□ -0.52
PTPRF-215ENST00000496447 YBX1P67809 324 aaKnown RBP11.79□□□□□ -0.52
PTPRF-215ENST00000496447 DGCR2P98153 550 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 MPPED2Q15777 294 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 MICBQ29980 383 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 TCTN1Q2MV58 587 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 TMEM268Q5VZI3 342 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 LYPD8Q6UX82 237 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 TMEM108Q6UXF1 575 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 C17orf78Q8N4C9 275 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 OR10D3Q8NH80 312 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 GPR87Q9BY21 358 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 ADAM19Q9H013 955 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 MMP25Q9NPA2 562 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 OCIAD1Q9NX40 245 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 A0A0B4J2E0 115 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 A0A1B0GX12 115 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 IFITM5A6NNB3 132 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 OR10A3P58181 314 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 PPP1CAP62136 330 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 BHLHA9Q7RTU4 235 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 SFT2D1Q8WV19 159 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 APOBEC4Q8WW27 367 aaKnown RBP11.79□□□□□ -0.52
PTPRF-215ENST00000496447 ST6GAL2Q96JF0 529 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 FZR1Q9UM11 496 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 NCBP2LA6PVI3 153 aaKnown RBP11.78□□□□□ -0.52
PTPRF-215ENST00000496447 TMIGD3P0DMS9 266 aaPredicted RBP11.78□□□□□ -0.52
PTPRF-215ENST00000496447 OR5H8P0DN80 308 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 PRICKLE4Q2TBC4 344 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 HFEQ30201 348 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 RHBDD2Q6NTF9 364 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 RELL2Q8NC24 303 aaPredicted RBP11.78□□□□□ -0.52
PTPRF-215ENST00000496447 SLC39A7Q92504 469 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 KNL1Q8NG31 2342 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 HPP00738 406 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 ADIRFQ15847 76 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 TMEM230Q96A57 120 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 TMEM18Q96B42 140 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 WDFY2Q96P53 400 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 CD80P33681 288 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 SOX8P57073 446 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 RAE1P78406 368 aaKnown RBP11.78□□□□□ -0.52
PTPRF-215ENST00000496447 TOMM34Q15785 309 aaPredicted RBP11.78□□□□□ -0.52
PTPRF-215ENST00000496447 LIMS2Q7Z4I7 341 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 HSD17B13Q7Z5P4 300 aaPredicted RBP11.78□□□□□ -0.52
PTPRF-215ENST00000496447 OR10P1Q8NGE3 313 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 OR4C3Q8NH37 302 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 MITD1Q8WV92 249 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 PELI1Q96FA3 418 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 COLQQ9Y215 455 aaPredicted RBP11.78□□□□□ -0.52
PTPRF-215ENST00000496447 OR13C7P0DN81 318 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 SRD5A2P31213 254 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 BAGE3Q86Y29 109 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 BAGE2Q86Y30 109 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 COX14Q96I36 57 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 ISG20L2Q9H9L3 353 aaKnown RBP11.78□□□□□ -0.52
PTPRF-215ENST00000496447 ZNF230Q9UIE0 474 aaPredicted RBP11.78□□□□□ -0.52
PTPRF-215ENST00000496447 STRCQ7RTU9 1775 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 PPP5D1E7EU14 171 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 SSSCA1O60232 199 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 CSF2RBP32927 897 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 SRP14P37108 136 aaKnown RBP11.78□□□□□ -0.52
PTPRF-215ENST00000496447 TAS2R45P59539 299 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 PP6455Q8WZ26 134 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 LRP12Q9Y561 859 aa11.78□□□□□ -0.52
PTPRF-215ENST00000496447 CDK5RAP2Q96SN8 1893 aa11.77□□□□□ -0.52
PTPRF-215ENST00000496447 SPAARA0A1B0GVQ0 90 aa11.77□□□□□ -0.52
PTPRF-215ENST00000496447 TMEM30CPA0ZSE6 113 aa11.77□□□□□ -0.52
PTPRF-215ENST00000496447 CDC14BO60729 498 aa11.77□□□□□ -0.52
PTPRF-215ENST00000496447 OR2T2Q6IF00 324 aa11.77□□□□□ -0.52
PTPRF-215ENST00000496447 FAHD1Q6P587 224 aa11.77□□□□□ -0.52
PTPRF-215ENST00000496447 ABI3BPQ7Z7G0 1075 aa11.77□□□□□ -0.52
PTPRF-215ENST00000496447 ZNF439Q8NDP4 499 aa11.77□□□□□ -0.52
PTPRF-215ENST00000496447 OTOSQ8NHW6 89 aa11.77□□□□□ -0.52
PTPRF-215ENST00000496447 TCFL5Q9UL49 500 aa11.77□□□□□ -0.52
PTPRF-215ENST00000496447 OSGIN2Q9Y236 505 aa11.77□□□□□ -0.52
PTPRF-215ENST00000496447 URGCP-MRPS24S4R325 110 aa11.77□□□□□ -0.52
PTPRF-215ENST00000496447 F5P12259 2224 aa11.77□□□□□ -0.52
PTPRF-215ENST00000496447 A0A1B0GTQ1 180 aa11.77□□□□□ -0.53
PTPRF-215ENST00000496447 SH2D7A6NKC9 451 aaPredicted RBP11.77□□□□□ -0.53
PTPRF-215ENST00000496447 PHOX2AO14813 284 aa11.77□□□□□ -0.53
PTPRF-215ENST00000496447 BCL2L11O43521 198 aa11.77□□□□□ -0.53
PTPRF-215ENST00000496447 RRASP10301 218 aa11.77□□□□□ -0.53
PTPRF-215ENST00000496447 GNG3P63215 75 aa11.77□□□□□ -0.53
PTPRF-215ENST00000496447 SPINK14Q6IE38 97 aa11.77□□□□□ -0.53
PTPRF-215ENST00000496447 Q8IYB0 196 aa11.77□□□□□ -0.53
PTPRF-215ENST00000496447 AMER3Q8N944 861 aa11.77□□□□□ -0.53
PTPRF-215ENST00000496447 GPX8Q8TED1 209 aa11.77□□□□□ -0.53
PTPRF-215ENST00000496447 LYZL6O75951 148 aa11.77□□□□□ -0.53
PTPRF-215ENST00000496447 BPIFB3P59826 476 aa11.77□□□□□ -0.53
PTPRF-215ENST00000496447 ZNF683Q8IZ20 524 aa11.77□□□□□ -0.53
PTPRF-215ENST00000496447 KDF1Q8NAX2 398 aaPredicted RBP11.77□□□□□ -0.53
PTPRF-215ENST00000496447 IAPPP10997 89 aa11.77□□□□□ -0.53
PTPRF-215ENST00000496447 HRH1P35367 487 aa11.77□□□□□ -0.53
PTPRF-215ENST00000496447 FABP5Q01469 135 aa11.77□□□□□ -0.53
PTPRF-215ENST00000496447 C16orf47Q6ZP98 133 aaPredicted RBP11.77□□□□□ -0.53
PTPRF-215ENST00000496447 TMEM179BQ7Z7N9 219 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms