RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 FAM53BQ14153 422 aa1.63□□□□□ -2.15
VPS50-219ENST00000495039 GABRA6Q16445 453 aa1.63□□□□□ -2.15
VPS50-219ENST00000495039 TAF9Q16594 264 aa1.63□□□□□ -2.15
VPS50-219ENST00000495039 ANXA8L1Q5VT79 327 aa1.63□□□□□ -2.15
VPS50-219ENST00000495039 TMEM236Q5W0B7 351 aa1.63□□□□□ -2.15
VPS50-219ENST00000495039 OR2T5Q6IEZ7 315 aa1.63□□□□□ -2.15
VPS50-219ENST00000495039 TMEM136Q6ZRR5 245 aa1.63□□□□□ -2.15
VPS50-219ENST00000495039 KATNAL2Q8IYT4 538 aa1.63□□□□□ -2.15
VPS50-219ENST00000495039 ORMDL3Q8N138 153 aa1.63□□□□□ -2.15
VPS50-219ENST00000495039 INO80EQ8NBZ0 244 aaPredicted RBP1.63□□□□□ -2.15
VPS50-219ENST00000495039 OR2T29Q8NH02 315 aa1.63□□□□□ -2.15
VPS50-219ENST00000495039 OR1S1Q8NH92 325 aa1.63□□□□□ -2.15
VPS50-219ENST00000495039 RDH12Q96NR8 316 aa1.63□□□□□ -2.15
VPS50-219ENST00000495039 ALS2CR12Q96Q35 445 aa1.63□□□□□ -2.15
VPS50-219ENST00000495039 SEC22CQ9BRL7 303 aa1.63□□□□□ -2.15
VPS50-219ENST00000495039 AGMATQ9BSE5 352 aa1.63□□□□□ -2.15
VPS50-219ENST00000495039 DEFB129Q9H1M3 183 aa1.63□□□□□ -2.15
VPS50-219ENST00000495039 REEP1Q9H902 201 aa1.63□□□□□ -2.15
VPS50-219ENST00000495039 CD209Q9NNX6 404 aa1.63□□□□□ -2.15
VPS50-219ENST00000495039 DDX19BQ9UMR2 479 aa1.63□□□□□ -2.15
VPS50-219ENST00000495039 ZNF257Q9Y2Q1 563 aa1.63□□□□□ -2.15
VPS50-219ENST00000495039 KIAA1671Q9BY89 1806 aa1.63□□□□□ -2.15
VPS50-219ENST00000495039 NID2Q14112 1375 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 SUPT3HB4E1H0 165 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 MYL12BO14950 172 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 HSBP1O75506 76 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 MMP7P09237 267 aaPredicted RBP1.62□□□□□ -2.15
VPS50-219ENST00000495039 TACSTD2P09758 323 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 P0C880 135 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 GFAPP14136 432 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 NELFEP18615 380 aaKnown RBP1.62□□□□□ -2.15
VPS50-219ENST00000495039 MPIP34949 423 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 ERFP50548 548 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 YWHAEP62258 255 aaKnown RBP1.62□□□□□ -2.15
VPS50-219ENST00000495039 ELF3P78545 371 aaPredicted RBP1.62□□□□□ -2.15
VPS50-219ENST00000495039 OR1Q1Q15612 314 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 TBPL2Q6SJ96 375 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 CLEC2AQ6UVW9 174 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 FAM122BQ7Z309 247 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 SLC30A8Q8IWU4 369 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 KIF2BQ8N4N8 673 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 SLC25A29Q8N8R3 303 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 LRRC75AQ8NAA5 344 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 BBOF1Q8ND07 529 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 SLC26A10Q8NG04 563 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 SNF8Q96H20 258 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 PDCD1LG2Q9BQ51 273 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 PLEKHF2Q9H8W4 249 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 FBXO8Q9NRD0 319 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 HEBP1Q9NRV9 189 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 ADA2Q9NZK5 511 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 RWDD2AQ9UIY3 292 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 ZNF391Q9UJN7 358 aa1.62□□□□□ -2.15
VPS50-219ENST00000495039 CCL15-CCL14A0A0B4J2E2 113 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 LINC01619G3V211 115 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 ZBTB5O15062 677 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 CCDC22O60826 627 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 CTAG2O75638 210 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 UPK1BO75841 260 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 FARS2O95363 451 aaKnown RBP1.61□□□□□ -2.15
VPS50-219ENST00000495039 CATP04040 527 aaKnown RBP1.61□□□□□ -2.15
VPS50-219ENST00000495039 TPM2P07951 284 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 FGF4P08620 206 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 THRAP10827 490 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 CXCR1P25024 350 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 COL8A2P25067 703 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 HLA-DMAP28067 261 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 BIKQ13323 160 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 ZNF235Q14590 738 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 CCL15Q16663 113 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 C5orf64Q2M2E5 130 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 STEAP4Q687X5 459 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 ZNF664Q8N3J9 261 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 WDR31Q8NA23 367 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 OR52N1Q8NH53 320 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 SFXN5Q8TD22 340 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 RXFP2Q8WXD0 754 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 MRPL48Q96GC5 212 aaKnown RBP1.61□□□□□ -2.15
VPS50-219ENST00000495039 CSPG4P5Q96PW8 444 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 NAPGQ99747 312 aaPredicted RBP1.61□□□□□ -2.15
VPS50-219ENST00000495039 NAA50Q9GZZ1 169 aaKnown RBP1.61□□□□□ -2.15
VPS50-219ENST00000495039 AHSPQ9NZD4 102 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 HMGXB4Q9UGU5 601 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 ZNF229Q9UJW7 825 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 RAB22AQ9UL26 194 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 NDRG2Q9UN36 371 aaKnown RBP1.61□□□□□ -2.15
VPS50-219ENST00000495039 THADAQ6YHU6 1953 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 SHROOM3Q8TF72 1996 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 ADGRA3Q8IWK6 1321 aa1.61□□□□□ -2.15
VPS50-219ENST00000495039 SHANK1Q9Y566 2161 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 A0A1W2PNN7 141 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 HACD1B0YJ81 288 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 SIVA1O15304 175 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 SCELO95171 688 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 LCA5LO95447 670 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 IGLV6-57P01721 117 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 IL3RAP26951 378 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 CD82P27701 267 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 PRSS3P35030 304 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 TAS2R39P59534 338 aa1.6□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms