RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 FAM89BQ8N5H3 189 aa18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 TNFAIP8L1Q8WVP5 186 aa18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 SNAPC3Q92966 411 aa18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 PRRT1Q99946 306 aa18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 LINC00470Q9BZP3 86 aa18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 PARD6AQ9NPB6 346 aa18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 ANAPC10Q9UM13 185 aa18.41■□□□□ 0.54
CCDC88B-208ENST00000492980 SYNGR4O95473 234 aa18.4■□□□□ 0.54
CCDC88B-208ENST00000492980 MMP7P09237 267 aaPredicted RBP18.4■□□□□ 0.54
CCDC88B-208ENST00000492980 TMED4Q7Z7H5 227 aa18.4■□□□□ 0.54
CCDC88B-208ENST00000492980 CYYR1Q96J86 154 aa18.4■□□□□ 0.54
CCDC88B-208ENST00000492980 GPR173Q9NS66 373 aa18.4■□□□□ 0.54
CCDC88B-208ENST00000492980 MFNGO00587 321 aa18.4■□□□□ 0.54
CCDC88B-208ENST00000492980 RAD51DO75771 328 aa18.4■□□□□ 0.54
CCDC88B-208ENST00000492980 HRH1P35367 487 aa18.4■□□□□ 0.54
CCDC88B-208ENST00000492980 PER3P56645 1201 aa18.4■□□□□ 0.54
CCDC88B-208ENST00000492980 CXADRP78310 365 aa18.4■□□□□ 0.54
CCDC88B-208ENST00000492980 ZMYND11Q15326 602 aa18.4■□□□□ 0.54
CCDC88B-208ENST00000492980 TGIF1Q15583 401 aa18.4■□□□□ 0.54
CCDC88B-208ENST00000492980 NRN1LQ496H8 165 aa18.4■□□□□ 0.54
CCDC88B-208ENST00000492980 MRGPRFQ96AM1 343 aa18.4■□□□□ 0.54
CCDC88B-208ENST00000492980 ARHGAP5-AS1Q96IT6 56 aa18.4■□□□□ 0.54
CCDC88B-208ENST00000492980 RADILQ96JH8 1075 aa18.4■□□□□ 0.54
CCDC88B-208ENST00000492980 HEXA-AS1Q9H8Q6 139 aa18.4■□□□□ 0.54
CCDC88B-208ENST00000492980 SLC7A10Q9NS82 523 aa18.4■□□□□ 0.54
CCDC88B-208ENST00000492980 PLEKHA6Q9Y2H5 1048 aa18.4■□□□□ 0.54
CCDC88B-208ENST00000492980 FOXI3A8MTJ6 420 aaPredicted RBP18.39■□□□□ 0.53
CCDC88B-208ENST00000492980 TBPP20226 339 aa18.39■□□□□ 0.53
CCDC88B-208ENST00000492980 HTR2BP41595 481 aa18.39■□□□□ 0.53
CCDC88B-208ENST00000492980 H2BFSP57053 126 aa18.39■□□□□ 0.53
CCDC88B-208ENST00000492980 TSPAN5P62079 268 aa18.39■□□□□ 0.53
CCDC88B-208ENST00000492980 DHODHQ02127 395 aa18.39■□□□□ 0.53
CCDC88B-208ENST00000492980 PNLIPRP3Q17RR3 467 aa18.39■□□□□ 0.53
CCDC88B-208ENST00000492980 TUSC5Q8IXB3 177 aa18.39■□□□□ 0.53
CCDC88B-208ENST00000492980 FAM109AQ8N4B1 249 aa18.39■□□□□ 0.53
CCDC88B-208ENST00000492980 FTMTQ8N4E7 242 aa18.39■□□□□ 0.53
CCDC88B-208ENST00000492980 UXS1Q8NBZ7 420 aa18.39■□□□□ 0.53
CCDC88B-208ENST00000492980 VSIG4Q9Y279 399 aa18.39■□□□□ 0.53
CCDC88B-208ENST00000492980 H3BUI4 141 aa18.38■□□□□ 0.53
CCDC88B-208ENST00000492980 GOSR2O14653 212 aa18.38■□□□□ 0.53
CCDC88B-208ENST00000492980 FARS2O95363 451 aaKnown RBP18.38■□□□□ 0.53
CCDC88B-208ENST00000492980 SIX6O95475 246 aa18.38■□□□□ 0.53
CCDC88B-208ENST00000492980 MGMTP16455 207 aa18.38■□□□□ 0.53
CCDC88B-208ENST00000492980 ZNF81P51508 661 aa18.38■□□□□ 0.53
CCDC88B-208ENST00000492980 RIPPLY1Q0D2K3 151 aa18.38■□□□□ 0.53
CCDC88B-208ENST00000492980 OR51T1Q8NGJ9 327 aa18.38■□□□□ 0.53
CCDC88B-208ENST00000492980 OR10K1Q8NGX5 313 aa18.38■□□□□ 0.53
CCDC88B-208ENST00000492980 FNDC9Q8TBE3 224 aa18.38■□□□□ 0.53
CCDC88B-208ENST00000492980 MCTS1Q9ULC4 181 aaKnown RBP18.38■□□□□ 0.53
CCDC88B-208ENST00000492980 MYO7BQ6PIF6 2116 aa18.38■□□□□ 0.53
CCDC88B-208ENST00000492980 ARGFXA6NJG6 315 aa18.38■□□□□ 0.53
CCDC88B-208ENST00000492980 KLRC4-KLRK1H3BQV0 150 aa18.38■□□□□ 0.53
CCDC88B-208ENST00000492980 NAT1P18440 290 aa18.38■□□□□ 0.53
CCDC88B-208ENST00000492980 SSTR2P30874 369 aa18.38■□□□□ 0.53
CCDC88B-208ENST00000492980 PPIAP62937 165 aaKnown RBP18.38■□□□□ 0.53
CCDC88B-208ENST00000492980 DEFB124Q8NES8 71 aa18.38■□□□□ 0.53
CCDC88B-208ENST00000492980 OR8H1Q8NGG4 311 aa18.38■□□□□ 0.53
CCDC88B-208ENST00000492980 SPSB1Q96BD6 273 aa18.38■□□□□ 0.53
CCDC88B-208ENST00000492980 CALHM2Q9HA72 323 aa18.38■□□□□ 0.53
CCDC88B-208ENST00000492980 PARPBPQ9NWS1 579 aa18.38■□□□□ 0.53
CCDC88B-208ENST00000492980 OPN4Q9UHM6 478 aa18.38■□□□□ 0.53
CCDC88B-208ENST00000492980 TTC28Q96AY4 2481 aa18.37■□□□□ 0.53
CCDC88B-208ENST00000492980 ZNF35P13682 527 aa18.37■□□□□ 0.53
CCDC88B-208ENST00000492980 SERPINA2P20848 420 aa18.37■□□□□ 0.53
CCDC88B-208ENST00000492980 PRSS12P56730 875 aa18.37■□□□□ 0.53
CCDC88B-208ENST00000492980 C17orf107Q6ZR85 190 aa18.37■□□□□ 0.53
CCDC88B-208ENST00000492980 TM2D1Q9BX74 207 aa18.37■□□□□ 0.53
CCDC88B-208ENST00000492980 BCO1Q9HAY6 547 aa18.37■□□□□ 0.53
CCDC88B-208ENST00000492980 ZNF391Q9UJN7 358 aa18.37■□□□□ 0.53
CCDC88B-208ENST00000492980 ARF1P84077 181 aaKnown RBP18.37■□□□□ 0.53
CCDC88B-208ENST00000492980 PABPC1L2AQ5JQF8 200 aa18.37■□□□□ 0.53
CCDC88B-208ENST00000492980 ZBTB37Q5TC79 503 aa18.37■□□□□ 0.53
CCDC88B-208ENST00000492980 DCAF12L2Q5VW00 463 aa18.37■□□□□ 0.53
CCDC88B-208ENST00000492980 ZFP62Q8NB50 900 aaPredicted RBP18.37■□□□□ 0.53
CCDC88B-208ENST00000492980 STEAP2Q8NFT2 490 aa18.37■□□□□ 0.53
CCDC88B-208ENST00000492980 OR4K15Q8NH41 348 aa18.37■□□□□ 0.53
CCDC88B-208ENST00000492980 S100A13Q99584 98 aa18.37■□□□□ 0.53
CCDC88B-208ENST00000492980 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP18.37■□□□□ 0.53
CCDC88B-208ENST00000492980 PLSCR5A0PG75 271 aa18.36■□□□□ 0.53
CCDC88B-208ENST00000492980 F5H5P2 479 aa18.36■□□□□ 0.53
CCDC88B-208ENST00000492980 RPL36A-HNRNPH2H7BZ11 118 aa18.36■□□□□ 0.53
CCDC88B-208ENST00000492980 CDK2AP1O14519 115 aa18.36■□□□□ 0.53
CCDC88B-208ENST00000492980 PMP2P02689 132 aa18.36■□□□□ 0.53
CCDC88B-208ENST00000492980 FTH1P19P0C7X4 201 aa18.36■□□□□ 0.53
CCDC88B-208ENST00000492980 CD46P15529 392 aa18.36■□□□□ 0.53
CCDC88B-208ENST00000492980 CD82P27701 267 aa18.36■□□□□ 0.53
CCDC88B-208ENST00000492980 MPPED2Q15777 294 aa18.36■□□□□ 0.53
CCDC88B-208ENST00000492980 STK11Q15831 433 aa18.36■□□□□ 0.53
CCDC88B-208ENST00000492980 C3AR1Q16581 482 aa18.36■□□□□ 0.53
CCDC88B-208ENST00000492980 TEX261Q6UWH6 196 aa18.36■□□□□ 0.53
CCDC88B-208ENST00000492980 C12orf45Q8N5I9 185 aaPredicted RBP18.36■□□□□ 0.53
CCDC88B-208ENST00000492980 ZDHHC22Q8N966 263 aa18.36■□□□□ 0.53
CCDC88B-208ENST00000492980 OCSTAMPQ9BR26 566 aa18.36■□□□□ 0.53
CCDC88B-208ENST00000492980 TMPRSS13Q9BYE2 586 aa18.36■□□□□ 0.53
CCDC88B-208ENST00000492980 RGCCQ9H4X1 137 aa18.36■□□□□ 0.53
CCDC88B-208ENST00000492980 RNF122Q9H9V4 155 aa18.36■□□□□ 0.53
CCDC88B-208ENST00000492980 B3GNT2Q9NY97 397 aa18.36■□□□□ 0.53
CCDC88B-208ENST00000492980 LIPGQ9Y5X9 500 aa18.36■□□□□ 0.53
CCDC88B-208ENST00000492980 U3KQ87 197 aa18.36■□□□□ 0.53
CCDC88B-208ENST00000492980 LOC100509620A0A075B734 347 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms