RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 MAGEB3O15480 346 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 RS1O15537 224 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 PMS2P2O95744 297 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 AMBPP02760 352 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 SERPINE1P05121 402 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 MYOD1P15172 320 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 CTNNA2P26232 953 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 C21orf33P30042 268 aaPredicted RBP3.56□□□□□ -1.84
HMGB1-207ENST00000468384 NPBWR1P48145 328 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 DYNLT3P51808 116 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 ELLP55199 621 aaPredicted RBP3.56□□□□□ -1.84
HMGB1-207ENST00000468384 OR2B6P58173 313 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 ISL1P61371 349 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 CRADDP78560 199 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 HSF2Q03933 536 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 SNX1Q13596 522 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 SLC25A53Q5H9E4 307 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 RESP18Q5W5W9 173 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 LHFPL4Q7Z7J7 247 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 DHDDSQ86SQ9 333 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 CATSPERDQ86XM0 798 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 CDH26Q8IXH8 852 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 C1orf87Q8N0U7 546 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 PGAM4Q8N0Y7 254 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 FGFRL1Q8N441 504 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 OR4C3Q8NH37 302 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 KLF14Q8TD94 323 aaPredicted RBP3.56□□□□□ -1.84
HMGB1-207ENST00000468384 THRSPQ92748 146 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 GGTLC1Q9BX51 225 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 LINC00470Q9BZP3 86 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 OR11A1Q9GZK7 315 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 LRMDAQ9H2I8 198 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 Q9H8V8 135 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 CENPMQ9NSP4 180 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 TXNDC16Q9P2K2 825 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 LINC00527Q9UJ94 153 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 SLC22A14Q9Y267 594 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 WDR83OSQ9Y284 106 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 TMED3Q9Y3Q3 217 aa3.56□□□□□ -1.84
HMGB1-207ENST00000468384 NACAE9PAV3 2078 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 TEX13DA0A0J9YY54 714 aaPredicted RBP3.55□□□□□ -1.84
HMGB1-207ENST00000468384 LINC00854A0A1B0GVQ3 168 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 PRSS46E5RG02 174 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 ANGPT2O15123 496 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 TBX19O60806 448 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 SEMA3DO95025 777 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 AK1P00568 194 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 HIST1H2AGP0C0S8 130 aaPredicted RBP3.55□□□□□ -1.84
HMGB1-207ENST00000468384 SOX6P35712 828 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 SSR1P43307 286 aaKnown RBP3.55□□□□□ -1.84
HMGB1-207ENST00000468384 OR3A1P47881 315 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 AMTP48728 403 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 PSMD4P55036 377 aaKnown RBP3.55□□□□□ -1.84
HMGB1-207ENST00000468384 PITPNAQ00169 270 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 ZNF117Q03924 483 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 ZNF415Q09FC8 603 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 PPP1R7Q15435 360 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 MAPK11Q15759 364 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 CD226Q15762 336 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 ZNF181Q2M3W8 571 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 CEACAM16Q2WEN9 425 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 DEFB135Q30KP9 77 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 LRRC38Q5VT99 294 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 RANBP3LQ86VV4 465 aaPredicted RBP3.55□□□□□ -1.84
HMGB1-207ENST00000468384 ZNF614Q8N883 585 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 OR52M1Q8NGK5 317 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 PRSS3P2Q8NHM4 247 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 MPLKIPQ8TAP9 179 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 FGFBP3Q8TAT2 258 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 GPR119Q8TDV5 335 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 FAM46BQ96A09 425 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 ZNF778Q96MU6 729 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 NEURL2Q9BR09 285 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 TMEM70Q9BUB7 260 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 FRMD8P1Q9BZ68 369 aaPredicted RBP3.55□□□□□ -1.84
HMGB1-207ENST00000468384 ELOVL6Q9H5J4 265 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 GORASP2Q9H8Y8 452 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 ZNF224Q9NZL3 707 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 MRTO4Q9UKD2 239 aaKnown RBP3.55□□□□□ -1.84
HMGB1-207ENST00000468384 CFAP45Q9UL16 551 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 PACSIN2Q9UNF0 486 aaPredicted RBP3.55□□□□□ -1.84
HMGB1-207ENST00000468384 DMRT1Q9Y5R6 373 aa3.55□□□□□ -1.84
HMGB1-207ENST00000468384 TRAV24A0A0B4J272 114 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 IGLV5-39A0A0G2JS06 123 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 TRBV2A0A0J9YWF9 115 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 A0A1W2PPI3 338 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 RPS10-NUDT3A0A1W2PQS6 291 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 SERPINE3A8MV23 424 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 ZNF99A8MXY4 864 aaPredicted RBP3.54□□□□□ -1.84
HMGB1-207ENST00000468384 OR11H12B2RN74 326 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 M0R1W7 72 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 TIMM8AO60220 97 aaPredicted RBP3.54□□□□□ -1.84
HMGB1-207ENST00000468384 EIF1BO60739 113 aaKnown RBP3.54□□□□□ -1.84
HMGB1-207ENST00000468384 SNAP29O95721 258 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 IGKV1D-16P01601 117 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 IGLV1-47P01700 117 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 C8GP07360 202 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 NGFRP08138 427 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 UCHL3P15374 230 aa3.54□□□□□ -1.84
HMGB1-207ENST00000468384 OTX1P32242 354 aaPredicted RBP3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms