RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 ADIRFQ15847 76 aa10.68□□□□□ -0.7
HMGB1-206ENST00000405805 ZNF764Q96H86 408 aaPredicted RBP10.68□□□□□ -0.7
HMGB1-206ENST00000405805 OR8B4Q96RC9 309 aa10.68□□□□□ -0.7
HMGB1-206ENST00000405805 NUDT9Q9BW91 350 aa10.68□□□□□ -0.7
HMGB1-206ENST00000405805 PLEKHJ1Q9NW61 149 aa10.68□□□□□ -0.7
HMGB1-206ENST00000405805 SH3BGRL2Q9UJC5 107 aa10.68□□□□□ -0.7
HMGB1-206ENST00000405805 AMDHD2Q9Y303 409 aa10.68□□□□□ -0.7
HMGB1-206ENST00000405805 BCL2L11O43521 198 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 TTRP02766 147 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 OPRM1P35372 400 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 OR1D5P58170 312 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 RAB11AP62491 216 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 TMEM176BQ3YBM2 270 aaPredicted RBP10.67□□□□□ -0.7
HMGB1-206ENST00000405805 ATPAF1Q5TC12 328 aaPredicted RBP10.67□□□□□ -0.7
HMGB1-206ENST00000405805 GKN2Q86XP6 184 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 C1orf87Q8N0U7 546 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 SPICQ8N5J4 248 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 SUMF1Q8NBK3 374 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 OR52N4Q8NGI2 321 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 BTF3L4Q96K17 158 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 COA4Q9NYJ1 87 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 ICE1Q9Y2F5 2266 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 AQP7P3A6NL99 342 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 GSTZ1O43708 216 aaPredicted RBP10.67□□□□□ -0.7
HMGB1-206ENST00000405805 NSA2O95478 260 aaKnown RBP10.67□□□□□ -0.7
HMGB1-206ENST00000405805 PSMB6P28072 239 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 GSK3AP49840 483 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 ASCL1P50553 236 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 PMS2P11Q13670 270 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 GNMTQ14749 295 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 ZNF658BQ4V348 819 aaPredicted RBP10.67□□□□□ -0.7
HMGB1-206ENST00000405805 PHF19Q5T6S3 580 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 C11orf87Q6NUJ2 197 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 LPCAT3Q6P1A2 487 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 LANCL3Q6ZV70 420 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 TMEM123Q8N131 208 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 C8orf44Q96CB5 159 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 CABLES2Q9BTV7 478 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 PTGES2Q9H7Z7 377 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 PIPOXQ9P0Z9 390 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 KLHL13Q9P2N7 655 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 H3F3AP84243 136 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 PDCD1Q15116 288 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 IAH1Q2TAA2 248 aaPredicted RBP10.67□□□□□ -0.7
HMGB1-206ENST00000405805 ELFN2Q5R3F8 820 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 ROBO4Q8WZ75 1007 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 TMEM18Q96B42 140 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 GDF15Q99988 308 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 MSL2Q9HCI7 577 aa10.67□□□□□ -0.7
HMGB1-206ENST00000405805 IGHV5-51A0A0C4DH38 117 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 NPIPA2E9PIF3 369 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 NPIPA3F8WFD2 350 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 RAB29O14966 203 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 AQP8O94778 261 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 GP1BAP07359 652 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 CALCRP30988 508 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 SLC6A8P48029 635 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 NHLRC3Q5JS37 347 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 RAET1LQ5VY80 246 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 UEVLDQ8IX04 471 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 SLC35G3Q8N808 338 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 ZNF709Q8N972 641 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 ASB17Q8WXJ9 295 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 IL22RA2Q969J5 263 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 SEH1LQ96EE3 360 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 CCNL2Q96S94 520 aaPredicted RBP10.66□□□□□ -0.7
HMGB1-206ENST00000405805 TIMP4Q99727 224 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 FAM103A1Q9BTL3 118 aaKnown RBP10.66□□□□□ -0.7
HMGB1-206ENST00000405805 GPR173Q9NS66 373 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 C19orf12Q9NSK7 152 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 CNOT1A5YKK6 2376 aaKnown RBP10.66□□□□□ -0.7
HMGB1-206ENST00000405805 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 A0A1W2PQF6 199 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 ZNF724A8MTY0 619 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 FGF2P09038 288 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 HNRNPA3P51991 378 aaKnown RBP10.66□□□□□ -0.7
HMGB1-206ENST00000405805 PHLDA2Q53GA4 152 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 TMEM268Q5VZI3 342 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 BRICD5Q6PL45 260 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 OR1S1Q8NH92 325 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 POC1BQ8TC44 478 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 KLHDC3Q9BQ90 382 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 ZNF160Q9HCG1 818 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 PLEK2Q9NYT0 353 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 MRPS18BQ9Y676 258 aaKnown RBP10.66□□□□□ -0.7
HMGB1-206ENST00000405805 DIDO1Q9BTC0 2240 aaKnown RBP10.66□□□□□ -0.7
HMGB1-206ENST00000405805 PPP5D1E7EU14 171 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 HSPB6O14558 160 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 CD37P11049 281 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 GABRG2P18507 467 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 MRPS34P82930 218 aaKnown RBP10.66□□□□□ -0.7
HMGB1-206ENST00000405805 ETV3LQ6ZN32 361 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 CPEB2Q7Z5Q1 589 aaKnown RBP10.66□□□□□ -0.7
HMGB1-206ENST00000405805 TMEM156Q8N614 296 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 ZNF439Q8NDP4 499 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 TMEM104Q8NE00 496 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 MISP3Q96FF7 219 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 V9GYS6 101 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 FRMPD3Q5JV73 1810 aa10.66□□□□□ -0.7
HMGB1-206ENST00000405805 HEATR5AQ86XA9 2040 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 139.9 ms