RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ICAM2P13598 275 aa17.56■□□□□ 0.4
CCDC88B-202ENST00000356786 DAOP14920 347 aa17.56■□□□□ 0.4
CCDC88B-202ENST00000356786 ANKRD31Q8N7Z5 1873 aa17.56■□□□□ 0.4
CCDC88B-202ENST00000356786 NPAS1Q99742 590 aa17.56■□□□□ 0.4
CCDC88B-202ENST00000356786 FIGNL2A6NMB9 653 aa17.56■□□□□ 0.4
CCDC88B-202ENST00000356786 CRYBA1P05813 215 aa17.56■□□□□ 0.4
CCDC88B-202ENST00000356786 UBE2G2P60604 165 aa17.56■□□□□ 0.4
CCDC88B-202ENST00000356786 SAT2Q96F10 170 aaPredicted RBP17.56■□□□□ 0.4
CCDC88B-202ENST00000356786 B3GAT1Q9P2W7 334 aa17.56■□□□□ 0.4
CCDC88B-202ENST00000356786 MASP2O00187 686 aa17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 TPPP2P59282 170 aa17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 IFITM2Q01629 132 aa17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 AWAT1Q58HT5 328 aa17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 AGBL5Q8NDL9 886 aa17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 EDEM2Q9BV94 578 aa17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 MMP25Q9NPA2 562 aa17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 DUSP13Q9UII6 198 aa17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 CLEC18AA5D8T8 446 aa17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 ANKUB1A6NFN9 424 aa17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 LANCL1O43813 399 aa17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 ADAP1O75689 374 aa17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 SCAND1P57086 179 aa17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 LHFPL2Q6ZUX7 228 aa17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 CLEC18CQ8NCF0 446 aa17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 AQP7P3A6NL99 342 aa17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 SEC14L6B5MCN3 397 aa17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 GSTZ1O43708 216 aaPredicted RBP17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 ENSAO43768 121 aaKnown RBP17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 FKBP2P26885 142 aaKnown RBP17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 DHODHQ02127 395 aa17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 OR4C3Q8NH37 302 aa17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 CHAC2Q8WUX2 184 aa17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 ARHGAP5-AS1Q96IT6 56 aa17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 FAM186AA6NE01 2351 aa17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 NRG2O14511 850 aaPredicted RBP17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 GP1BAP07359 652 aa17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 Q6ZNB5 142 aa17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 KDF1Q8NAX2 398 aaPredicted RBP17.55■□□□□ 0.4
CCDC88B-202ENST00000356786 IGHV3-64DA0A0J9YX35 117 aa17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 ABCD3P28288 659 aa17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 ZNF426Q9BUY5 554 aa17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 TIMM10BQ9Y5J6 103 aa17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 A0A087X0M5 115 aa17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 A0A1B0GX30 115 aa17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 CTDSPLO15194 276 aa17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 HSBP1O75506 76 aa17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 ONECUT2O95948 504 aa17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 Q7L0L9 218 aa17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 C11orf40Q8WZ69 217 aa17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 PBX4Q9BYU1 374 aa17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 LANCL2Q9NS86 450 aa17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 SERTM1A2A2V5 107 aa17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 RFC3P40938 356 aa17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 NKAIN1Q4KMZ8 207 aa17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 OR5AS1Q8N127 324 aa17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 PHOSPHO2Q8TCD6 241 aa17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 KNTC1P50748 2209 aa17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 OR7C2O60412 319 aa17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 HIST1H1DP16402 221 aaKnown RBP17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 PPP1CBP62140 327 aa17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 FAM173AQ9BQD7 235 aa17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 LIN7CQ9NUP9 197 aaKnown RBP17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 CCL27Q9Y4X3 112 aa17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 SEC16AO15027 2179 aa17.54■□□□□ 0.4
CCDC88B-202ENST00000356786 CTRB1P17538 263 aa17.53■□□□□ 0.4
CCDC88B-202ENST00000356786 CTRB2Q6GPI1 263 aa17.53■□□□□ 0.4
CCDC88B-202ENST00000356786 PCM1Q15154 2024 aa17.53■□□□□ 0.4
CCDC88B-202ENST00000356786 C7orf66A4D0T2 115 aa17.53■□□□□ 0.4
CCDC88B-202ENST00000356786 MMP7P09237 267 aaPredicted RBP17.53■□□□□ 0.4
CCDC88B-202ENST00000356786 GVQW1Q8N7I0 195 aa17.53■□□□□ 0.4
CCDC88B-202ENST00000356786 BCL7CQ8WUZ0 217 aaPredicted RBP17.53■□□□□ 0.4
CCDC88B-202ENST00000356786 GPR137Q96N19 417 aa17.53■□□□□ 0.4
CCDC88B-202ENST00000356786 PPP1R3EQ9H7J1 279 aa17.53■□□□□ 0.4
CCDC88B-202ENST00000356786 TRAPPC1Q9Y5R8 145 aa17.53■□□□□ 0.4
CCDC88B-202ENST00000356786 XKRY2A2RUG3 117 aa17.53■□□□□ 0.4
CCDC88B-202ENST00000356786 LY86O95711 162 aa17.53■□□□□ 0.4
CCDC88B-202ENST00000356786 GPANK1O95872 356 aa17.53■□□□□ 0.4
CCDC88B-202ENST00000356786 IGHA1P01876 353 aa17.53■□□□□ 0.4
CCDC88B-202ENST00000356786 SLC25A6P12236 298 aa17.53■□□□□ 0.4
CCDC88B-202ENST00000356786 LIMS2Q7Z4I7 341 aa17.53■□□□□ 0.4
CCDC88B-202ENST00000356786 OSR2Q8N2R0 312 aa17.53■□□□□ 0.4
CCDC88B-202ENST00000356786 OR4C5Q8NGB2 326 aa17.53■□□□□ 0.4
CCDC88B-202ENST00000356786 RHBDD1Q8TEB9 315 aa17.53■□□□□ 0.4
CCDC88B-202ENST00000356786 GPR160Q9UJ42 338 aa17.53■□□□□ 0.4
CCDC88B-202ENST00000356786 BRWD3Q6RI45 1802 aa17.53■□□□□ 0.4
CCDC88B-202ENST00000356786 RPS19BP1Q86WX3 136 aaKnown RBP17.52■□□□□ 0.4
CCDC88B-202ENST00000356786 TMEM104Q8NE00 496 aa17.52■□□□□ 0.4
CCDC88B-202ENST00000356786 SLC17A4Q9Y2C5 497 aa17.52■□□□□ 0.4
CCDC88B-202ENST00000356786 C7orf77A4D0Y5 90 aa17.52■□□□□ 0.4
CCDC88B-202ENST00000356786 CHEK1O14757 476 aa17.52■□□□□ 0.4
CCDC88B-202ENST00000356786 BCAT2O15382 392 aaPredicted RBP17.52■□□□□ 0.4
CCDC88B-202ENST00000356786 CEACAM5P06731 702 aa17.52■□□□□ 0.4
CCDC88B-202ENST00000356786 TMEM33P57088 247 aa17.52■□□□□ 0.4
CCDC88B-202ENST00000356786 OR1D5P58170 312 aa17.52■□□□□ 0.4
CCDC88B-202ENST00000356786 GTF2H5Q6ZYL4 71 aa17.52■□□□□ 0.4
CCDC88B-202ENST00000356786 MS4A10Q96PG2 267 aa17.52■□□□□ 0.4
CCDC88B-202ENST00000356786 RIMS4Q9H426 269 aaPredicted RBP17.52■□□□□ 0.4
CCDC88B-202ENST00000356786 HS3ST3A1Q9Y663 406 aa17.52■□□□□ 0.4
CCDC88B-202ENST00000356786 A0A1W2PNV4 684 aa17.52■□□□□ 0.39
CCDC88B-202ENST00000356786 SPRY1O43609 319 aaPredicted RBP17.52■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms