RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 OR5H6Q8NGV6 325 aa13.25□□□□□ -0.29
COL17A1-201ENST00000353479 CMBLQ96DG6 245 aa13.25□□□□□ -0.29
COL17A1-201ENST00000353479 SCARF2Q96GP6 870 aaPredicted RBP13.25□□□□□ -0.29
COL17A1-201ENST00000353479 ESRP2Q9H6T0 727 aaKnown RBP13.25□□□□□ -0.29
COL17A1-201ENST00000353479 ICAM5Q9UMF0 924 aa13.25□□□□□ -0.29
COL17A1-201ENST00000353479 RPH3ALQ9UNE2 315 aa13.25□□□□□ -0.29
COL17A1-201ENST00000353479 ANKRD34CP0C6C1 535 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 MRPS34P82930 218 aaKnown RBP13.24□□□□□ -0.29
COL17A1-201ENST00000353479 LSM11P83369 360 aaKnown RBP eCLIP13.24□□□□□ -0.29
COL17A1-201ENST00000353479 ADPRHL1Q8NDY3 354 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 C17orf47Q8NEP4 570 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 TTTY12Q9BZ98 90 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 KLK11Q9UBX7 282 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 SSUH2Q9Y2M2 353 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 BTBD17A6NE02 478 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 XRCC3O43542 346 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 NKX6-1P78426 367 aaPredicted RBP13.24□□□□□ -0.29
COL17A1-201ENST00000353479 XAF1Q6GPH4 301 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 OR13G1Q8NGZ3 307 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 EXTL1Q92935 676 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 MRPS24Q96EL2 167 aaKnown RBP13.24□□□□□ -0.29
COL17A1-201ENST00000353479 FLVCR2Q9UPI3 526 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 TAS2R30P59541 319 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 FXNQ16595 210 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 BHLHA15Q7RTS1 189 aaPredicted RBP13.24□□□□□ -0.29
COL17A1-201ENST00000353479 CATSPERDQ86XM0 798 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 HSD17B11Q8NBQ5 300 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 MARCH1Q8TCQ1 289 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 SLC26A1Q9H2B4 701 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 CYC1P08574 325 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 NKX2-1P43699 371 aaPredicted RBP13.24□□□□□ -0.29
COL17A1-201ENST00000353479 GZMMP51124 257 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 CD276Q5ZPR3 534 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 SUMF2Q8NBJ7 301 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 FAM213BQ8TBF2 198 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 ST8SIA4Q92187 359 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 TDRD6O60522 2096 aaKnown RBP13.24□□□□□ -0.29
COL17A1-201ENST00000353479 C4orf51C9J302 202 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 UBE2MP61081 183 aaKnown RBP13.24□□□□□ -0.29
COL17A1-201ENST00000353479 TGIF1Q15583 401 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 NPEPL1Q8NDH3 523 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 RND1Q92730 232 aa13.24□□□□□ -0.29
COL17A1-201ENST00000353479 GFRA3O60609 400 aa13.23□□□□□ -0.29
COL17A1-201ENST00000353479 PRSS23O95084 383 aa13.23□□□□□ -0.29
COL17A1-201ENST00000353479 BGLAPP02818 100 aa13.23□□□□□ -0.29
COL17A1-201ENST00000353479 NME2P22392 152 aa13.23□□□□□ -0.29
COL17A1-201ENST00000353479 ZNF529Q6P280 563 aa13.23□□□□□ -0.29
COL17A1-201ENST00000353479 OR1S2Q8NGQ3 325 aa13.23□□□□□ -0.29
COL17A1-201ENST00000353479 PCM1Q15154 2024 aa13.23□□□□□ -0.29
COL17A1-201ENST00000353479 SULT1C2O00338 296 aa13.23□□□□□ -0.29
COL17A1-201ENST00000353479 FUT3P21217 361 aa13.23□□□□□ -0.29
COL17A1-201ENST00000353479 CHATP28329 748 aa13.23□□□□□ -0.29
COL17A1-201ENST00000353479 PEA15Q15121 130 aa13.23□□□□□ -0.29
COL17A1-201ENST00000353479 RTL8BQ17RB0 113 aa13.23□□□□□ -0.29
COL17A1-201ENST00000353479 C20orf196Q8IYI0 205 aa13.23□□□□□ -0.29
COL17A1-201ENST00000353479 FAM212BQ9NTI7 297 aaPredicted RBP13.23□□□□□ -0.29
COL17A1-201ENST00000353479 NDUFB3O43676 98 aa13.23□□□□□ -0.29
COL17A1-201ENST00000353479 AQP8O94778 261 aa13.23□□□□□ -0.29
COL17A1-201ENST00000353479 MICBQ29980 383 aa13.23□□□□□ -0.29
COL17A1-201ENST00000353479 CDONQ4KMG0 1287 aa13.23□□□□□ -0.29
COL17A1-201ENST00000353479 LIN37Q96GY3 246 aaPredicted RBP13.23□□□□□ -0.29
COL17A1-201ENST00000353479 CRYBB2P43320 205 aa13.23□□□□□ -0.29
COL17A1-201ENST00000353479 KLF3P57682 345 aaPredicted RBP13.23□□□□□ -0.29
COL17A1-201ENST00000353479 LRRC10Q5BKY1 277 aa13.23□□□□□ -0.29
COL17A1-201ENST00000353479 BORCS7Q96B45 105 aa13.23□□□□□ -0.29
COL17A1-201ENST00000353479 A0A0G2JMZ2 1700 aa13.23□□□□□ -0.29
COL17A1-201ENST00000353479 LRRC37A2A6NM11 1700 aa13.23□□□□□ -0.29
COL17A1-201ENST00000353479 TRGV10A0A0A0MS01 117 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 SERPINE3A8MV23 424 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 ACAA2P42765 397 aaKnown RBP13.22□□□□□ -0.29
COL17A1-201ENST00000353479 SSX1Q16384 188 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 PRSS53Q2L4Q9 553 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 GALMQ96C23 342 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 CNTNAP3Q9BZ76 1288 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 MRM2Q9UI43 246 aaKnown RBP13.22□□□□□ -0.29
COL17A1-201ENST00000353479 ZNF85Q03923 595 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 EIF2S3LQ2VIR3 472 aaKnown RBP13.22□□□□□ -0.29
COL17A1-201ENST00000353479 ZNF626Q68DY1 528 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 UBALD1Q8TB05 177 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 HPSE2Q8WWQ2 592 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 GON7Q9BXV9 100 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 KIAA1456Q9P272 454 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 LNP1A1A4G5 178 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 A8MXE2 369 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 S100A7P31151 101 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 FGF9P31371 208 aaPredicted RBP13.22□□□□□ -0.29
COL17A1-201ENST00000353479 SERPINF1P36955 418 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 Q8IYB0 196 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 CCL17Q92583 94 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 PLPPR2Q96GM1 343 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 ZNF275Q9NSD4 429 aaPredicted RBP13.22□□□□□ -0.29
COL17A1-201ENST00000353479 ANKRD33BA6NCL7 494 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 ST8SIA3O43173 380 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 PTGFRP43088 359 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 TMEM268Q5VZI3 342 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 CDC20BQ86Y33 519 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 OR4S1Q8NGB4 309 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 RPS10P5Q9NQ39 176 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 ZNF236Q9UL36 1845 aa13.22□□□□□ -0.29
COL17A1-201ENST00000353479 LCTP09848 1927 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms