RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 C9orf170A2RU37 121 aa13□□□□□ -0.33
CLCNKA-201ENST00000331433 RFPL4AA6NLU0 287 aa13□□□□□ -0.33
CLCNKA-201ENST00000331433 RFPL4AL1F8VTS6 287 aa13□□□□□ -0.33
CLCNKA-201ENST00000331433 ZNF883P0CG24 379 aa13□□□□□ -0.33
CLCNKA-201ENST00000331433 UBBP0CG47 229 aa13□□□□□ -0.33
CLCNKA-201ENST00000331433 CRYGSP22914 178 aa13□□□□□ -0.33
CLCNKA-201ENST00000331433 ACKR3P25106 362 aa13□□□□□ -0.33
CLCNKA-201ENST00000331433 IL13RA1P78552 427 aa13□□□□□ -0.33
CLCNKA-201ENST00000331433 ARFRP1Q13795 201 aa13□□□□□ -0.33
CLCNKA-201ENST00000331433 LRRC37A5PQ49AS3 106 aa13□□□□□ -0.33
CLCNKA-201ENST00000331433 GPR137CQ8N3F9 429 aa13□□□□□ -0.33
CLCNKA-201ENST00000331433 AKR7LQ8NHP1 331 aa13□□□□□ -0.33
CLCNKA-201ENST00000331433 ABHD3Q8WU67 409 aa13□□□□□ -0.33
CLCNKA-201ENST00000331433 PP6455Q8WZ26 134 aa13□□□□□ -0.33
CLCNKA-201ENST00000331433 MFFQ9GZY8 342 aa13□□□□□ -0.33
CLCNKA-201ENST00000331433 TMEM38BQ9NVV0 291 aa13□□□□□ -0.33
CLCNKA-201ENST00000331433 SYNGR3O43761 229 aa12.99□□□□□ -0.33
CLCNKA-201ENST00000331433 AVPR2P30518 371 aa12.99□□□□□ -0.33
CLCNKA-201ENST00000331433 FOXO1Q12778 655 aa12.99□□□□□ -0.33
CLCNKA-201ENST00000331433 RAB35Q15286 201 aa12.99□□□□□ -0.33
CLCNKA-201ENST00000331433 ZBTB44Q8NCP5 570 aa12.99□□□□□ -0.33
CLCNKA-201ENST00000331433 MAFIPQ8WZ33 124 aa12.99□□□□□ -0.33
CLCNKA-201ENST00000331433 FBXW5Q969U6 566 aa12.99□□□□□ -0.33
CLCNKA-201ENST00000331433 PDCD10Q9BUL8 212 aa12.99□□□□□ -0.33
CLCNKA-201ENST00000331433 GPR173Q9NS66 373 aa12.99□□□□□ -0.33
CLCNKA-201ENST00000331433 LRFN1Q9P244 771 aa12.99□□□□□ -0.33
CLCNKA-201ENST00000331433 PCDHGA1Q9Y5H4 931 aa12.99□□□□□ -0.33
CLCNKA-201ENST00000331433 OR5H14A6NHG9 310 aa12.99□□□□□ -0.33
CLCNKA-201ENST00000331433 FAM25EA8MYX2 175 aa12.99□□□□□ -0.33
CLCNKA-201ENST00000331433 EFSO43281 561 aa12.99□□□□□ -0.33
CLCNKA-201ENST00000331433 NAT2P11245 290 aa12.99□□□□□ -0.33
CLCNKA-201ENST00000331433 ZNF32P17041 273 aa12.99□□□□□ -0.33
CLCNKA-201ENST00000331433 TBPP20226 339 aa12.99□□□□□ -0.33
CLCNKA-201ENST00000331433 PLXDC2Q6UX71 529 aa12.99□□□□□ -0.33
CLCNKA-201ENST00000331433 ZPBPQ9BS86 351 aa12.99□□□□□ -0.33
CLCNKA-201ENST00000331433 SPRY4Q9C004 299 aa12.99□□□□□ -0.33
CLCNKA-201ENST00000331433 ANAPC10Q9UM13 185 aa12.99□□□□□ -0.33
CLCNKA-201ENST00000331433 FREM1Q5H8C1 2179 aa12.99□□□□□ -0.33
CLCNKA-201ENST00000331433 POM121CA8CG34 1229 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 I3L521 148 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 MTRF1O75570 445 aaKnown RBP12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 IL2RAP01589 272 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 APOC1P02654 83 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 SP9P0CG40 484 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 BLVRBP30043 206 aaPredicted RBP12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 NPY4RP50391 375 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 ABLIM2Q6H8Q1 611 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 GSG1LQ6UXU4 331 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 KCTD9Q7L273 389 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 HOGA1Q86XE5 327 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 FAM89BQ8N5H3 189 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 FGFBP3Q8TAT2 258 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 MITD1Q8WV92 249 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 ASB13Q8WXK3 278 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 HAS2Q92819 552 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 ST6GALNAC5Q9BVH7 336 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 SNAPC5O75971 98 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 CD8AP01732 235 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 IGHV3-9P01782 118 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 CST2P09228 141 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 RRASP10301 218 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 RPA2P15927 270 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 NAT1P18440 290 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 ALDH3B1P43353 468 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 GFRA1P56159 465 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 PNLIPRP3Q17RR3 467 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 CEACAM16Q2WEN9 425 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 ZNF546Q86UE3 836 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 OR52H1Q8NGJ2 320 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 OR1F12Q8NHA8 337 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 TERB2Q8NHR7 220 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 REEP6Q96HR9 211 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 S100A13Q99584 98 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 DDA1Q9BW61 102 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 HES7Q9BYE0 225 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 MED13Q9UHV7 2174 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 FAM186AA6NE01 2351 aa12.98□□□□□ -0.33
CLCNKA-201ENST00000331433 DNAJC13O75165 2243 aa12.97□□□□□ -0.33
CLCNKA-201ENST00000331433 FOXI3A8MTJ6 420 aaPredicted RBP12.97□□□□□ -0.33
CLCNKA-201ENST00000331433 LCATP04180 440 aa12.97□□□□□ -0.33
CLCNKA-201ENST00000331433 HPNP05981 417 aa12.97□□□□□ -0.33
CLCNKA-201ENST00000331433 HOXD11P31277 338 aaPredicted RBP12.97□□□□□ -0.33
CLCNKA-201ENST00000331433 DLSTP36957 453 aa12.97□□□□□ -0.33
CLCNKA-201ENST00000331433 DRAM2Q6UX65 266 aa12.97□□□□□ -0.33
CLCNKA-201ENST00000331433 Q6ZSR3 168 aa12.97□□□□□ -0.33
CLCNKA-201ENST00000331433 GALNTL5Q7Z4T8 443 aa12.97□□□□□ -0.33
CLCNKA-201ENST00000331433 SEMA6DQ8NFY4 1073 aa12.97□□□□□ -0.33
CLCNKA-201ENST00000331433 COQ8AQ8NI60 647 aa12.97□□□□□ -0.33
CLCNKA-201ENST00000331433 CPT1CQ8TCG5 803 aa12.97□□□□□ -0.33
CLCNKA-201ENST00000331433 SIGLEC12Q96PQ1 595 aa12.97□□□□□ -0.33
CLCNKA-201ENST00000331433 PHB2Q99623 299 aa12.97□□□□□ -0.33
CLCNKA-201ENST00000331433 FOXB1Q99853 325 aa12.97□□□□□ -0.33
CLCNKA-201ENST00000331433 OCSTAMPQ9BR26 566 aa12.97□□□□□ -0.33
CLCNKA-201ENST00000331433 ZNF407Q9C0G0 2248 aa12.97□□□□□ -0.33
CLCNKA-201ENST00000331433 M0R296 226 aa12.97□□□□□ -0.33
CLCNKA-201ENST00000331433 PLATP00750 562 aa12.97□□□□□ -0.33
CLCNKA-201ENST00000331433 CELA3AP09093 270 aa12.97□□□□□ -0.33
CLCNKA-201ENST00000331433 ZNF250P15622 560 aa12.97□□□□□ -0.33
CLCNKA-201ENST00000331433 PI3P19957 117 aa12.97□□□□□ -0.33
CLCNKA-201ENST00000331433 AMY2BP19961 511 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms