RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 HIST1H2BDP58876 126 aa11.92□□□□□ -0.5
CCDC88C-201ENST00000331194 HIST1H2BCP62807 126 aa11.92□□□□□ -0.5
CCDC88C-201ENST00000331194 SGCGQ13326 291 aa11.92□□□□□ -0.5
CCDC88C-201ENST00000331194 SHHQ15465 462 aa11.92□□□□□ -0.5
CCDC88C-201ENST00000331194 HIST2H2BEQ16778 126 aa11.92□□□□□ -0.5
CCDC88C-201ENST00000331194 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.92□□□□□ -0.5
CCDC88C-201ENST00000331194 KCTD18Q6PI47 426 aaPredicted RBP11.92□□□□□ -0.5
CCDC88C-201ENST00000331194 ZNF321PQ8N8H1 164 aa11.92□□□□□ -0.5
CCDC88C-201ENST00000331194 HIST1H2BHQ93079 126 aa11.92□□□□□ -0.5
CCDC88C-201ENST00000331194 HIST1H2BNQ99877 126 aa11.92□□□□□ -0.5
CCDC88C-201ENST00000331194 HIST1H2BMQ99879 126 aa11.92□□□□□ -0.5
CCDC88C-201ENST00000331194 ABHD14AQ9BUJ0 271 aa11.92□□□□□ -0.5
CCDC88C-201ENST00000331194 SLC17A4Q9Y2C5 497 aa11.92□□□□□ -0.5
CCDC88C-201ENST00000331194 MRPS23Q9Y3D9 190 aaKnown RBP11.92□□□□□ -0.5
CCDC88C-201ENST00000331194 RP1P56715 2156 aa11.92□□□□□ -0.5
CCDC88C-201ENST00000331194 PHF3Q92576 2039 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 TRGC2P03986 189 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 EIF5AP63241 154 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 HAGHQ16775 308 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 TMEM156Q8N614 296 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 HOXB13Q92826 284 aaPredicted RBP11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 TCTN2Q96GX1 697 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 ARHGAP5-AS1Q96IT6 56 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 POMT1Q9Y6A1 747 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 IGLV1-36A0A0B4J1U3 117 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 A0A1W2PQU0 124 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 JTBO76095 146 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 F10P00742 488 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 QDPRP09417 244 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 PNMTP11086 282 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 ANOS1P23352 680 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 ERVFRD-1P60508 538 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 ROM1Q03395 351 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 C19orf47Q8N9M1 422 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 OR52N5Q8NH56 324 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 MFSD8Q8NHS3 518 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 MUCL1Q96DR8 90 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 SCARF2Q96GP6 870 aaPredicted RBP11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 LPAR5Q9H1C0 372 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 SLC35B3Q9H1N7 401 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 FAM86C1Q9NVL1 165 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 R4GMQ9 66 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 MED12Q93074 2177 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 PTPRSQ13332 1948 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 CDC14CA4D256 554 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 TAAR5O14804 337 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 SRSF10O75494 262 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 DIRAS3O95661 229 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 NUDT14O95848 222 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 CRABP1P29762 137 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 HOXA6P31267 233 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 PTGER4P35408 488 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 CST6Q15828 149 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 OR14C36Q8NHC7 312 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 MRPL24Q96A35 216 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 C19orf12Q9NSK7 152 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 FAM212BQ9NTI7 297 aaPredicted RBP11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 HEBP2Q9Y5Z4 205 aa11.91□□□□□ -0.5
CCDC88C-201ENST00000331194 MDKP21741 143 aaPredicted RBP11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 RPP30P78346 268 aaKnown RBP11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 RHEBQ15382 184 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 SP6Q3SY56 376 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 C2orf27AQ580R0 203 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 EMC4Q5J8M3 183 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 SOHLH1Q5JUK2 328 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 DTWD2Q8NBA8 298 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 OR5H2Q8NGV7 314 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 THRSPQ92748 146 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 REEP6Q96HR9 211 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 PRRX2Q99811 253 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 APOOQ9BUR5 198 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 FAM60AQ9NP50 221 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 IGKV1D-43A0A0B4J1Z2 117 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 H0YL77 283 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 DANCRP0C864 163 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 AMY2BP19961 511 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 OR3A4PP47883 348 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 DHPSP49366 369 aaPredicted RBP11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 ARFRP1Q13795 201 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 GLIPR1L1Q6UWM5 242 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 C1QL4Q86Z23 238 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 AVL9Q8NBF6 648 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 OR5D18Q8NGL1 313 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 FAM213BQ8TBF2 198 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 OR1E3Q8WZA6 343 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 OR10A5Q9H207 317 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 TCEAL2Q9H3H9 227 aaPredicted RBP11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 EHFQ9NZC4 300 aa11.9□□□□□ -0.5
CCDC88C-201ENST00000331194 EPOPA6NHQ4 379 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 H0YIG0 161 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 NSA2O95478 260 aaKnown RBP11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 HCKP08631 526 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 PET100P0DJ07 73 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 SLC2A1P11166 492 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 RNH1P13489 461 aaKnown RBP11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 IL11P20809 199 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 OR3A2P47893 321 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 FAM3AP98173 230 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 OR8G1Q15617 311 aa11.89□□□□□ -0.51
CCDC88C-201ENST00000331194 PLXDC2Q6UX71 529 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms