RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 SLC25A43Q8WUT9 341 aaPredicted RBP10.36□□□□□ -0.75
VPS39-201ENST00000318006 PELI1Q96FA3 418 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 OR5V1Q9UGF6 321 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 SERGEFQ9UGK8 458 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 KCNE1BA0A087WTH5 132 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 C9orf170A2RU37 121 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 ERVH48-1M5A8F1 160 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 ABHD16AO95870 558 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 GABRG2P18507 467 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 HNF1AP20823 631 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 APOBEC1P41238 236 aaKnown RBP10.36□□□□□ -0.75
VPS39-201ENST00000318006 WNT3P56703 355 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 FAM209BQ5JX69 171 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 MOB1BQ7L9L4 216 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 PINX1Q96BK5 328 aaKnown RBP10.36□□□□□ -0.75
VPS39-201ENST00000318006 GPR84Q9NQS5 396 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 PSENENQ9NZ42 101 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 LHX6Q9UPM6 363 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 PRSS37A4D1T9 235 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 CHEK1O14757 476 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 SFT2D2O95562 160 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 TCN2P20062 427 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 S100A7P31151 101 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 PKIAP61925 76 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 CNEP1R1Q8N9A8 125 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 ZNF383Q8NA42 475 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 LILRB1Q8NHL6 650 aaPredicted RBP10.35□□□□□ -0.75
VPS39-201ENST00000318006 S1PR5Q9H228 398 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 OPN4Q9UHM6 478 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 SIPA1L1O43166 1804 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 FOCADQ5VW36 1801 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 SERPINE3A8MV23 424 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 ENPP1P22413 925 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 GFERP55789 205 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 HSF1Q00613 529 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 IFITM2Q01629 132 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 RAB32Q13637 225 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 TMEM65Q6PI78 240 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 OVCH2Q7RTZ1 564 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 ARSGQ96EG1 525 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 YTHDF2Q9Y5A9 579 aaKnown RBP10.35□□□□□ -0.75
VPS39-201ENST00000318006 FIGNL2A6NMB9 653 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 NXPH2O95156 264 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 DUS4LO95620 317 aaKnown RBP10.35□□□□□ -0.75
VPS39-201ENST00000318006 UBE2G2P60604 165 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 ETFDHQ16134 617 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 SPEM1Q8N4L4 309 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 FAM122AQ96E09 287 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 MEGF10Q96KG7 1140 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 BARHL1Q9BZE3 327 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 PRDM7Q9NQW5 492 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 CDK2AP1O14519 115 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 IAPPP10997 89 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 ZNF25P17030 456 aaPredicted RBP10.35□□□□□ -0.75
VPS39-201ENST00000318006 USF1P22415 310 aaPredicted RBP10.35□□□□□ -0.75
VPS39-201ENST00000318006 CD96P40200 585 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 GALR1P47211 349 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 GSK3AP49840 483 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 RAE1P78406 368 aaKnown RBP10.35□□□□□ -0.75
VPS39-201ENST00000318006 ARSJQ5FYB0 599 aaPredicted RBP10.35□□□□□ -0.75
VPS39-201ENST00000318006 ABI3BPQ7Z7G0 1075 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 ISOC2Q96AB3 205 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 PACRGQ96M98 296 aaPredicted RBP10.35□□□□□ -0.75
VPS39-201ENST00000318006 LAT2Q9GZY6 243 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 LPAR3Q9UBY5 353 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 NEU3Q9UQ49 428 aa10.35□□□□□ -0.75
VPS39-201ENST00000318006 NOSIPQ9Y314 301 aaKnown RBP10.35□□□□□ -0.75
VPS39-201ENST00000318006 ARG1P05089 322 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 SLC25A4P12235 298 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 GABRA4P48169 554 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 TAS2R45P59539 299 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 PRTGQ2VWP7 1150 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 ZNF687Q8N1G0 1237 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 CORO2AQ92828 525 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 PBOV1Q9GZY1 135 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 FAM234AQ9H0X4 552 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 PLSCR5A0PG75 271 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 C7orf77A4D0Y5 90 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 K7EQM0 130 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 CTAG2O75638 210 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 CST7O76096 145 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 AKR7A3O95154 331 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 HPXP02790 462 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 GLB1P16278 677 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 FKBP2P26885 142 aaKnown RBP10.34□□□□□ -0.75
VPS39-201ENST00000318006 CCKARP32238 428 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 CD200P41217 278 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 PPIAP62937 165 aaKnown RBP10.34□□□□□ -0.75
VPS39-201ENST00000318006 RPL7L1Q6DKI1 246 aaKnown RBP10.34□□□□□ -0.75
VPS39-201ENST00000318006 MORN4Q8NDC4 146 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 CA5BP1Q8WTZ4 195 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 FER1L6-AS2Q96M78 137 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 EMC6Q9BV81 110 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 GPR87Q9BY21 358 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 RP1L1Q8IWN7 2480 aaPredicted RBP10.34□□□□□ -0.75
VPS39-201ENST00000318006 SERTM1A2A2V5 107 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 METTL12A8MUP2 240 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 WNT11O96014 354 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 PMCHP20382 165 aa10.34□□□□□ -0.75
VPS39-201ENST00000318006 FCER1GP30273 86 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms