RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 FAM24AA6NFZ4 105 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 EIF1BO60739 113 aaKnown RBP8.93□□□□□ -0.98
COL6A3-201ENST00000295550 KIR2DL3P43628 341 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 ERHP84090 104 aaKnown RBP8.93□□□□□ -0.98
COL6A3-201ENST00000295550 RBPJQ06330 500 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 DUSP8Q13202 625 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 C9orf152Q5JTZ5 239 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 UTP23Q9BRU9 249 aaKnown RBP8.93□□□□□ -0.98
COL6A3-201ENST00000295550 CMC2Q9NRP2 79 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 MMP24Q9Y5R2 645 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 FABP5Q01469 135 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 ARHGEF39Q8N4T4 335 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 TMEM99Q8N816 258 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 S1PR3Q99500 378 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 FLVCR2Q9UPI3 526 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 TOX3O15405 576 aaPredicted RBP8.93□□□□□ -0.98
COL6A3-201ENST00000295550 TMPRSS11DO60235 418 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 SELEP16581 610 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 EVX1P49640 407 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 WDR74Q6RFH5 385 aaPredicted RBP8.93□□□□□ -0.98
COL6A3-201ENST00000295550 BCL2L2Q92843 193 aaPredicted RBP8.93□□□□□ -0.98
COL6A3-201ENST00000295550 UCN3Q969E3 161 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 PINX1Q96BK5 328 aaKnown RBP8.93□□□□□ -0.98
COL6A3-201ENST00000295550 CDCP1Q9H5V8 836 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 CASP8AP2Q9UKL3 1982 aa8.93□□□□□ -0.98
COL6A3-201ENST00000295550 A0A1W2PR48 441 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 DUS4LO95620 317 aaKnown RBP8.92□□□□□ -0.98
COL6A3-201ENST00000295550 B2MP61769 119 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 RAE1P78406 368 aaKnown RBP8.92□□□□□ -0.98
COL6A3-201ENST00000295550 DEFB133Q30KQ1 61 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 OR10P1Q8NGE3 313 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 C2orf50Q96LR7 162 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 WDR61Q9GZS3 305 aaKnown RBP8.92□□□□□ -0.98
COL6A3-201ENST00000295550 SLC35B3Q9H1N7 401 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 PPIL1Q9Y3C6 166 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 WNT11O96014 354 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 TPBGQ13641 420 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 WDR73Q6P4I2 378 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 H1FNTQ75WM6 255 aaPredicted RBP8.92□□□□□ -0.98
COL6A3-201ENST00000295550 OR52B4Q8NGK2 314 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 RCL1Q9Y2P8 373 aaKnown RBP8.92□□□□□ -0.98
COL6A3-201ENST00000295550 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.92□□□□□ -0.98
COL6A3-201ENST00000295550 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.92□□□□□ -0.98
COL6A3-201ENST00000295550 H3BVH4 76 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 CXCL10P02778 98 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 ICAM2P13598 275 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 AGFG1P52594 562 aaKnown RBP8.92□□□□□ -0.98
COL6A3-201ENST00000295550 OR5A2Q8NGI9 324 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 GPR37O15354 613 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 ACSM5Q6NUN0 579 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 NEURL2Q9BR09 285 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 FAM166BA8MTA8 275 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 OR2J2O76002 312 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 WNT3P56703 355 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 MAT1AQ00266 395 aaKnown RBP8.92□□□□□ -0.98
COL6A3-201ENST00000295550 PRAMEF20Q5VT98 475 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 LYSMD4Q5XG99 296 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 ANKRD16Q6P6B7 361 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 DRAM2Q6UX65 266 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 CTSFQ9UBX1 484 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 PMS2P1A4D2B8 440 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 M0R1X1 148 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 PIAS2O75928 621 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 ZNF750Q32MQ0 723 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 BTLAQ7Z6A9 289 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 SPNS2Q8IVW8 549 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 TOE1Q96GM8 510 aaKnown RBP8.92□□□□□ -0.98
COL6A3-201ENST00000295550 SEC11CQ9BY50 192 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 B4GALT3O60512 393 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 SYS1Q8N2H4 156 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 ELOVL1Q9BW60 279 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 SIRT5Q9NXA8 310 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 FCN1O00602 326 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 MBTPS2O43462 519 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 LAMTOR5O43504 91 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 CTNSO60931 367 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 GALP22466 123 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 DCTDP32321 178 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 OR4C16Q8NGL9 310 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 OR6S1Q8NH40 331 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 FAM210BQ96KR6 192 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 RTL8AQ9BWD3 113 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 AUNIPQ9H7T9 357 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 HCFC2Q9Y5Z7 792 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 GBF1Q92538 1859 aa8.92□□□□□ -0.98
COL6A3-201ENST00000295550 M0R082 166 aa8.91□□□□□ -0.98
COL6A3-201ENST00000295550 TCN2P20062 427 aa8.91□□□□□ -0.98
COL6A3-201ENST00000295550 FCRL6Q6DN72 434 aa8.91□□□□□ -0.98
COL6A3-201ENST00000295550 FDX2Q6P4F2 183 aa8.91□□□□□ -0.98
COL6A3-201ENST00000295550 WDR34Q96EX3 536 aa8.91□□□□□ -0.98
COL6A3-201ENST00000295550 G3V3Y1 287 aa8.91□□□□□ -0.98
COL6A3-201ENST00000295550 NOVA1P51513 510 aaKnown RBP8.91□□□□□ -0.98
COL6A3-201ENST00000295550 TMEFF1Q8IYR6 380 aa8.91□□□□□ -0.98
COL6A3-201ENST00000295550 OR2A14Q96R47 310 aa8.91□□□□□ -0.98
COL6A3-201ENST00000295550 AAMDCQ9H7C9 122 aa8.91□□□□□ -0.98
COL6A3-201ENST00000295550 ZC3H12DA2A288 527 aaKnown RBP8.91□□□□□ -0.98
COL6A3-201ENST00000295550 TBX19O60806 448 aa8.91□□□□□ -0.98
COL6A3-201ENST00000295550 C17orf67Q0P5P2 114 aa8.91□□□□□ -0.98
COL6A3-201ENST00000295550 DUSP5Q16690 384 aa8.91□□□□□ -0.98
COL6A3-201ENST00000295550 OR2A2Q6IF42 318 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms